Evidence map›Paper›PMID 29856309›Full record

ArticleMicrobiology (Reading, England)2018

Random sorting of Campylobacter jejuni phase variants due to a narrow bottleneck during colonization of broiler chickens.

Joseph J Wanford, Lea Lango-Scholey, Harald Nothaft, Yue Hu, Christine M Szymanski, Christopher D Bayliss

Abstract read
In one paragraph

Article in Microbiology (Reading, England), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Joseph J WanfordDepartment of Genetics and Genome Biology, University of Leicester, Leicester, UK.
Lea Lango-ScholeyDepartment of Genetics and Genome Biology, University of Leicester, Leicester, UK.
Harald NothaftDepartment of Biological Sciences, University of Alberta, Edmonton, Canada.
Yue HuDepartment of Genetics and Genome Biology, University of Leicester, Leicester, UK.
Christine M SzymanskiDepartment of Microbiology and Complex Carbohydrate Research Center, University of Georgia, Athens, USA.
Christopher D BaylissDepartment of Genetics and Genome Biology, University of Leicester, Leicester, UK.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phase variation (PV), involving stochastic switches in gene expression, is exploited by the human pathogen Campylobacter jejuni to adapt to different environmental and host niches. Phase-variable genes of C. jejuni modulate expression of multiple surface determinants, and hence may influence host colonization. Population bottlenecks can rapidly remove the diversity generated by PV, and strict single-cell bottlenecks can lead to propagation of PV states with highly divergent phenotypes. Using a combination of high-throughput fragment size analysis and comparison with in vivo and in silico bottleneck models, we have characterized a narrow population bottleneck during the experimental colonization of broiler chickens with C. jejuni strain 81-176. We identified high levels of variation in five PV genes in the inoculum, and subsequently, massively decreased population diversity following colonization. Each bird contained a dominant five-gene phasotype that was present in the inoculum indicative of random sorting through a narrow, non-selective bottleneck during colonization. These results are evidence of the potential for confounding effects of PV on in vivo studies of Campylobacter colonization factors and poultry vaccine studies. Our results are also an argument for population bottlenecks as mediators of stochastic variability in the propensity to survive through the food chain and cause clinical human disease.

Indexed as

Genetic VariationAdaptation, PhysiologicalAnimalsBacterial VaccinesBiological Variation, PopulationCampylobacter InfectionsCampylobacter jejuniChickensGene ExpressionGene FrequencyGenes, BacterialGenome, BacterialHost-Pathogen InteractionsPoultry DiseasesBacterial Vaccinesbroiler chickensCampylobacterphase variationpopulation bottleneck

Identifiers

PMID29856309
PMCPMC6097035

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.