Evidence map›Paper›PMID 29855601›Full record

ArticleScientific reports2018

Transcriptome analysis in Hevea brasiliensis latex revealed changes in hormone signalling pathways during ethephon stimulation and consequent Tapping Panel Dryness.

Pascal Montoro, Shuangyang Wu, Bénédicte Favreau, Eva Herlinawati, Cécile Labrune, Marie-Laure Martin-Magniette, Stéphanie Pointet, Maryannick Rio, Julie Leclercq, Sigit Ismawanto and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 48 citations in OpenAlex.

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  9. Identifying Terpenoid Biosynthesis Genes inMolecules (Basel, Switzerland) · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Pascal MontoroCIRAD, UMR AGAP, F-34398, Montpellier, France. pascal.montoro@cirad.fr.
Shuangyang WuCIRAD, UMR AGAP, F-34398, Montpellier, France.
Bénédicte FavreauCIRAD, UMR AGAP, F-34398, Montpellier, France.
Eva HerlinawatiIndonesian Rubber Research Institute, Sembawa Research Centre, Palembang, Indonesia.
Cécile LabruneInstitute of Plant Sciences Paris Saclay IPS2, CNRS, INRA, Université Paris-Sud, Université Evry, Université Paris-Saclay, Bâtiment 630, 91405, Orsay, France.
Marie-Laure Martin-MagnietteInstitute of Plant Sciences Paris Saclay IPS2, CNRS, INRA, Université Paris-Sud, Université Evry, Université Paris-Saclay, Bâtiment 630, 91405, Orsay, France.
Stéphanie PointetCIRAD, UMR AGAP, F-34398, Montpellier, France.
Maryannick RioCIRAD, UMR AGAP, F-34398, Montpellier, France.
Julie LeclercqCIRAD, UMR AGAP, F-34398, Montpellier, France.
Sigit IsmawantoIndonesian Rubber Research Institute, Sembawa Research Centre, Palembang, Indonesia.
KuswanhadiIndonesian Rubber Research Institute, Sembawa Research Centre, Palembang, Indonesia.
Centre de Coopération Internationale en Recherche Agronomique pour le Développement · FRUniversité Paris-Sud · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tapping Panel Dryness (TPD) affects latex production in Hevea brasiliensis. This physiological syndrome involves the agglutination of rubber particles, which leads to partial or complete cessation of latex flow. Latex harvesting consists in tapping soft bark. Ethephon can be applied to stimulate latex flow and its regeneration in laticifers. Several studies have reported transcriptome changes in bark tissues. This study is the first report on deep RNA sequencing of latex to compare the effect of ethephon stimulation and TPD severity. Trees were carefully selected for paired-end sequencing using an Illumina HiSeq 2000. In all, 43 to 60 million reads were sequenced for each treatment in three biological replicates (slight TPD trees without ethephon stimulation, and slight and severe TPD trees with ethephon treatment). Differentially expressed genes were identified and annotated, giving 8,111 and 728 in response to ethephon in slight TPD trees and in ethephon-induced severe TPD trees, respectively. A biological network of responses to ethephon and TPD highlighted the major influence of metabolic processes and the response to stimulus, especially wounding and jasmonate depression in TPD-affected trees induced by ethephon stimulation.

Indexed as

Gene Expression Regulation, PlantGene Regulatory NetworksHeveaLatexOrganophosphorus CompoundsPlant BarkPlant DiseasesPlant Growth RegulatorsPrincipal Component AnalysisRNA, PlantSequence Analysis, RNASignal TransductionTranscriptomeethephonLatexOrganophosphorus CompoundsPlant Growth RegulatorsRNA, Plant

Identifiers

PMID29855601
PMCPMC5981547
OpenAlexW2807511067

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.