Evidence map›Paper›PMID 29855598›Full record

ArticleScientific reports2018

Comparative genomic analysis of a naturally competent Elizabethkingia anophelis isolated from an eye infection.

Eswarappa Pradeep Bulagonda, Bhavani Manivannan, Niranjana Mahalingam, Manmath Lama, Pachi Pulusu Chanakya, Balaram Khamari, Sudhir Jadhao, Madavan Vasudevan, Valakunja Nagaraja

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Genomic characterization of respiratoryFrontiers in microbiology · 2026
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  6. Linalool exhibit antimicrobial ability againstCurrent research in microbial sciences · 2025
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  10. Population genomics of emergingEmerging microbes & infections · 2022
    Article
  11. Biofilm formation and antibiotic sensitivity inFrontiers in cellular and infection microbiology · 2022
    Article
  12. Antibiotics (Basel, Switzerland) · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Eswarappa Pradeep BulagondaDepartment of Biosciences, Sri Sathya Sai Institute of Higher Learning, Prasanthi Nilayam, Puttaparthi, Andhra Pradesh, India. bepradeep@sssihl.edu.in.ORCID http://orcid.org/0000-0001-8022-8168
Bhavani ManivannanDepartment of Biosciences, Sri Sathya Sai Institute of Higher Learning, Prasanthi Nilayam, Puttaparthi, Andhra Pradesh, India.
Niranjana MahalingamDepartment of Biosciences, Sri Sathya Sai Institute of Higher Learning, Prasanthi Nilayam, Puttaparthi, Andhra Pradesh, India.
Manmath LamaDepartment of Biosciences, Sri Sathya Sai Institute of Higher Learning, Prasanthi Nilayam, Puttaparthi, Andhra Pradesh, India.
Pachi Pulusu ChanakyaDepartment of Biosciences, Sri Sathya Sai Institute of Higher Learning, Prasanthi Nilayam, Puttaparthi, Andhra Pradesh, India.
Balaram KhamariDepartment of Biosciences, Sri Sathya Sai Institute of Higher Learning, Prasanthi Nilayam, Puttaparthi, Andhra Pradesh, India.
Sudhir JadhaoBionivid technology Pvt Ltd, 4C-209, 4th cross, Kasturi Nagar, Bengaluru, India.
Madavan VasudevanBionivid technology Pvt Ltd, 4C-209, 4th cross, Kasturi Nagar, Bengaluru, India.
Valakunja NagarajaDepartment of Microbiology and Cell Biology, Indian Institute of Science, Bengaluru, India. vraj@iisc.ac.in.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Elizabethkingia anophelis has now emerged as an opportunistic human pathogen. However, its mechanisms of transmission remain unexplained. Comparative genomic (CG) analysis of E. anopheles endophthalmitis strain surprisingly found from an eye infection patient with twenty-five other E. anophelis genomes revealed its potential to participate in horizontal gene transfer. CG analysis revealed that the study isolate has an open pan genome and has undergone extensive gene rearrangements. We demonstrate that the strain is naturally competent, hitherto not reported in any members of Elizabethkingia. Presence of competence related genes, mobile genetic elements, Type IV, VI secretory systems and a unique virulence factor arylsulfatase suggests a different lineage of the strain. Deciphering the genome of E. anophelis having a reservoir of antibiotic resistance genes and virulence factors associated with diverse human infections may open up avenues to deal with the myriad of its human infections and devise strategies to combat the pathogen.

Indexed as

Genome, BacterialAgedAnti-Bacterial AgentsComparative Genomic HybridizationDrug Resistance, BacterialEndophthalmitisFlavobacteriaceaeGene Transfer, HorizontalHumansPhylogenyVirulenceAnti-Bacterial Agents

Identifiers

PMID29855598
PMCPMC5981450

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.