Evidence map›Paper›PMID 29855347›Full record

ArticleMicrobiome2018

Oral microbiota in youth with perinatally acquired HIV infection.

Jacqueline R Starr, Yanmei Huang, Kyu Ha Lee, C M Murphy, Anna-Barbara Moscicki, Caroline H Shiboski, Mark I Ryder, Tzy-Jyun Yao, Lina L Faller, Russell B Van Dyke and 2 more

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in Microbiome, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT01418014 (Adolescent Master Protocol), which is not on this map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT01418014 completednot on this map

Adolescent Master Protocol

TypeobservationalSponsorHarvard School of Public Health (HSPH)Ran2007 to 2021Enrolled678ConditionsHIV/AIDS
3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 30 citations in OpenAlex.

  1. Trial
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Observational
  12. Review
  13. Article
  14. Article
  15. Salivary metabolite levels in perinatally HIV-infected youth with periodontal disease.Metabolomics : Official journal of the Metabolomic Society · 2020
    Observational
  16. Article
  17. Article
  18. Review
  19. Article
  20. Microbiome Dependent Regulation of TFrontiers in immunology · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 1 country.

Jacqueline R StarrForsyth Institute, 245 First St, Cambridge, MA, 02142, USA.
Yanmei HuangForsyth Institute, 245 First St, Cambridge, MA, 02142, USA.
Kyu Ha LeeForsyth Institute, 245 First St, Cambridge, MA, 02142, USA.
C M MurphyForsyth Institute, 245 First St, Cambridge, MA, 02142, USA.
Anna-Barbara MoscickiDepartment of Pediatrics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, USA.
Caroline H ShiboskiDepartment of Orofacial Sciences, School of Dentistry, University of California San Francisco, San Francisco, CA, USA.
Mark I RyderDepartment of Orofacial Sciences, School of Dentistry, University of California San Francisco, San Francisco, CA, USA.
Tzy-Jyun YaoCenter for Biostatistics in AIDS Research, Harvard T.H. Chan School of Public Health, Boston, MA, USA.
Lina L FallerGinkgo Bioworks, Boston, MA, USA.
Russell B Van DykeTulane University School of Medicine, New Orleans, LA, USA.
Bruce J PasterForsyth Institute, 245 First St, Cambridge, MA, 02142, USA. bpaster@forsyth.org.ORCID 0000-0002-5872-1906
Pediatric HIV/AIDS Cohort Study
Harvard University · USTulane University · USUniversity of California, Los Angeles · USUniversity of California, San Francisco · USBoston University · US

Funding

PHACS - Data and Operations CenterU01HD052102 · NICHD · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI WILLIAMS, PAIGE L · 2005 to 2019
$242.7M
Harvard Clinical and Translational Science CenterUL1TR001102 · NCATS · HARVARD MEDICAL SCHOOL · PI NADLER, LEE MARSHALL · 2013 to 2017
$106.2M
Pediatric HIV/AIDS Cohort Study (PHACS): Understanding Maternal HIV Disease through Pregnancy and the Postpartum Period and its Role in Child Health OutcomesU01HD052104 · NICHD · TULANE UNIVERSITY OF LOUISIANA · PI VAN DYKE, RUSSELL B. · 2005 to 2019
$15.7M
NCATS NIH HHS UL1 TR001102NICHD NIH HHS U01 HD052102NICHD NIH HHS U01 HD052104NIH HHS HD052102NIH HHS HD052104
6 · The paper itself

Abstract

backgroundMicrobially mediated oral diseases can signal underlying HIV/AIDS progression in HIV-infected adults. The role of the oral microbiota in HIV-infected youth is not known. The Adolescent Master Protocol of the Pediatric HIV/AIDS Cohort Study is a longitudinal study of perinatally HIV-infected (PHIV) and HIV-exposed, uninfected (PHEU) youth. We compared oral microbiome levels and associations with caries or periodontitis in 154 PHIV and 100 PHEU youth.

resultsSpecies richness and alpha diversity differed little between PHIV and PHEU youth. Group differences in average counts met the significance threshold for six taxa; two Corynebacterium species were lower in PHIV and met thresholds for noteworthiness. Several known periodontitis-associated organisms (Prevotella nigrescens, Tannerella forsythia, Aggregatibacter actinomycetemcomitans, and Filifactor alocis) exhibited expected associations with periodontitis in PHEU youth, associations not observed in PHIV youth. In both groups, odds of caries increased with counts of taxa in four genera, Streptococcus, Scardovia, Bifidobacterium, and Lactobacillus.

conclusionsThe microbiomes of PHIV and PHEU youth were similar, although PHIV youth seemed to have fewer "health"-associated taxa such as Corynebacterium species. These results are consistent with the hypothesis that HIV infection, or its treatment, may contribute to oral dysbiosis.

Indexed as

AdolescentAdultBacteriaChildCross-Sectional StudiesDental CariesFemaleHIV InfectionsHumansLongitudinal StudiesMaleMicrobiotaMouth MucosaPeriodontitisRNA, Ribosomal, 16SSalivaRNA, Ribosomal, 16SCorynebacteriumOral microbiomePediatricPerinatally infected HIV

Identifiers

PMID29855347
PMCPMC5984365
OpenAlexW2807125638

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.