Evidence map›Paper›PMID 29854210›Full record

ArticleAMIA ... Annual Symposium proceedings. AMIA Symposium2017

Architecting the Data Loading Process for an i2b2 Research Data Warehouse: Full Reload versus Incremental Updating.

Andrew R Post, Miao Ai, Akshatha Kalsanka Pai, Marc Overcash, David S Stephens

Abstract read
In one paragraph

Article in AMIA ... Annual Symposium proceedings. AMIA Symposium, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Clinical Data Warehousing: A Scoping Review.Journal of the Society for Clinical Data Management · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. The Korea Cancer Big Data Platform (K-CBP) for Cancer Research.International journal of environmental research and public health · 2019
    Article
  8. A Method for EHR Phenotype Management in an i2b2 Data Warehouse.AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Andrew R PostEmory University, Atlanta, GA.
Miao AiEmory University, Atlanta, GA.
Akshatha Kalsanka PaiEmory University, Atlanta, GA.
Marc OvercashEmory University, Atlanta, GA.
David S StephensEmory University, Atlanta, GA.

Funding

Atlanta Clinical and Translational Science Institute (ACTSI) RenewalUL1TR000454 · NCATS · EMORY UNIVERSITY · PI STEPHENS, DAVID S · 2012 to 2016
$25.8M
The CardioVascular Research GridR24HL085343 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI WINSLOW, RAIMOND LESTER · 2007 to 2015
$19.4M
Resources for development and validation of Radiomic analyses & Adaptive TherapyU01CA187013 · NCI · WASHINGTON UNIVERSITY · PI PRIOR, FRED WILLIAM, SHARMA, ASHISH · 2014 to 2018
$2.6M
NCATS NIH HHS UL1 TR000454NCI NIH HHS U01 CA187013NHLBI NIH HHS R24 HL085343
6 · The paper itself

Abstract

Research data warehouses integrate research and patient data from one or more sources into a single data model that is designed for research. Typically, institutions update their warehouse by fully reloading it periodically. The alternative is to update the warehouse incrementally with new, changed and/or deleted data. Full reloads avoid having to correct and add to a live system, but they can render the data outdated for clinical trial accrual. They place a substantial burden on source systems, involve intermittent work that is challenging to resource, and may involve tight coordination across IT and informatics units. We have implemented daily incremental updating for our i2b2 data warehouse. Incremental updating requires substantial up-front development, and it can expose provisional data to investigators. However, it may support more use cases, it may be a better fit for academic healthcare IT organizational structures, and ongoing support needs appear to be similar or lower.

Indexed as

Biomedical ResearchDatabases as TopicData WarehousingHumans

Identifiers

PMID29854210
PMCPMC5977612

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.