Evidence map›Paper›PMID 29851958›Full record

ArticlePLoS biology2018

Quantitative proteomic characterization and comparison of T helper 17 and induced regulatory T cells.

Imran Mohammad, Kari Nousiainen, Santosh D Bhosale, Inna Starskaia, Robert Moulder, Anne Rokka, Fang Cheng, Ponnuswamy Mohanasundaram, John E Eriksson, David R Goodlett and 2 more

Open access · goldAbstract readComparative StudyValidation Study
In one paragraph

Article in PLoS biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Differential Protein Expression ofPathogens (Basel, Switzerland) · 2023
    Article
  4. Roles of vimentin in health and disease.Genes & development · 2022
    Review
  5. Review
  6. Wu-Teng-Gao External Treatment Improves Th17/Treg Balance in Rheumatoid Arthritis.Evidence-based complementary and alternative medicine : eCAM · 2022
    Article
  7. Observational
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Imran MohammadTurku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland.
Kari NousiainenDepartment of Computer Science, Aalto University, Espoo, Finland.
Santosh D BhosaleTurku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland.
Inna StarskaiaTurku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland.
Robert MoulderTurku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland.
Anne RokkaTurku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland.
Fang ChengCell Biology, Biosciences, Faculty of Science and Engineering, Åbo Akademi University, Turku, Finland.
Ponnuswamy MohanasundaramCell Biology, Biosciences, Faculty of Science and Engineering, Åbo Akademi University, Turku, Finland.
John E ErikssonCell Biology, Biosciences, Faculty of Science and Engineering, Åbo Akademi University, Turku, Finland.
David R GoodlettDepartment of Pharmaceutical Sciences, University of Maryland School of Pharmacy, Baltimore, Maryland, United States of America.
Harri LähdesmäkiDepartment of Computer Science, Aalto University, Espoo, Finland.
Zhi ChenTurku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland.ORCID 0000-0002-4658-7463
Åbo Akademi University · FIAalto University · FIUniversity of Maryland, Baltimore · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The transcriptional network and protein regulators that govern T helper 17 (Th17) cell differentiation have been studied extensively using advanced genomic approaches. For a better understanding of these biological processes, we have moved a step forward, from gene- to protein-level characterization of Th17 cells. Mass spectrometry-based label-free quantitative (LFQ) proteomics analysis were made of in vitro differentiated murine Th17 and induced regulatory T (iTreg) cells. More than 4,000 proteins, covering almost all subcellular compartments, were detected. Quantitative comparison of the protein expression profiles resulted in the identification of proteins specifically expressed in the Th17 and iTreg cells. Importantly, our combined analysis of proteome and gene expression data revealed protein expression changes that were not associated with changes at the transcriptional level. Our dataset provides a valuable resource, with new insights into the proteomic characteristics of Th17 and iTreg cells, which may prove useful in developing treatment of autoimmune diseases and developing tumor immunotherapy.

Indexed as

ProteomeAnimalsCell DifferentiationForkhead Transcription FactorsMiceProteomicsTh17 CellsT-Lymphocytes, RegulatoryTransforming Growth Factor betaVimentinForkhead Transcription FactorsFoxp3 protein, mouseProteomeTransforming Growth Factor betaVimentinVim protein, mouse

Identifiers

PMID29851958
PMCPMC5979006
OpenAlexW2807179609

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.