Evidence map›Paper›PMID 29851259›Full record

ArticlePlant biotechnology journal2019

Chromatin interacting factor OsVIL2 increases biomass and rice grain yield.

Jungil Yang, Lae-Hyeon Cho, Jinmi Yoon, Hyeryung Yoon, Antt Htet Wai, Woo-Jong Hong, Muho Han, Hitoshi Sakakibara, Wanqi Liang, Ki-Hong Jung and 4 more

Open access · goldAbstract read
In one paragraph

Article in Plant biotechnology journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
8.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 50 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 3 countries.

Jungil YangCrop Biotech Institute, Kyung Hee University, Yongin, Korea.
Lae-Hyeon ChoCrop Biotech Institute, Kyung Hee University, Yongin, Korea.
Jinmi YoonCrop Biotech Institute, Kyung Hee University, Yongin, Korea.
Hyeryung YoonCrop Biotech Institute, Kyung Hee University, Yongin, Korea.
Antt Htet WaiCrop Biotech Institute, Kyung Hee University, Yongin, Korea.
Woo-Jong HongCrop Biotech Institute, Kyung Hee University, Yongin, Korea.
Muho HanCrop Biotech Institute, Kyung Hee University, Yongin, Korea.
Hitoshi SakakibaraPlant Productivity Systems Research Group, RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama, Japan.
Wanqi LiangState Key Laboratory of Hybrid Rice, Shanghai Jiao Tong University-University of Adelaide Joint Centre for Agriculture and Health, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
Ki-Hong JungCrop Biotech Institute, Kyung Hee University, Yongin, Korea.
Jong-Seong JeonCrop Biotech Institute, Kyung Hee University, Yongin, Korea.
Hee-Jong KohDepartment of Plant Science, Research Institute of Agriculture and Life Sciences, and Plant Genomics and Breeding Institute, Seoul National University, Seoul, Korea.
Dabing ZhangState Key Laboratory of Hybrid Rice, Shanghai Jiao Tong University-University of Adelaide Joint Centre for Agriculture and Health, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
Gynheung AnCrop Biotech Institute, Kyung Hee University, Yongin, Korea.ORCID 0000-0002-8570-7587
Kyung Hee University · KRShanghai Jiao Tong University · CNRIKEN Center for Sustainable Resource Science · JPSeoul National University · KR

Funding

Cooperative Research Program for Agriculture Science & Technology Development PJ013210National Research Foundation of Korea NRF-2007-0093862Rural Development Administration, Republic of Korea
6 · The paper itself

Abstract

Grain number is an important agronomic trait. We investigated the roles of chromatin interacting factor Oryza sativa VIN3-LIKE 2 (OsVIL2), which controls plant biomass and yield in rice. Mutations in OsVIL2 led to shorter plants and fewer grains whereas its overexpression (OX) enhanced biomass production and grain numbers when compared with the wild type. RNA-sequencing analyses revealed that 1958 genes were up-regulated and 2096 genes were down-regulated in the region of active division within the first internodes of OX plants. Chromatin immunoprecipitation analysis showed that, among the downregulated genes, OsVIL2 was directly associated with chromatins in the promoter region of CYTOKININ OXIDASE/DEHYDROGENASE2 (OsCKX2), a gene responsible for cytokinin degradation. Likewise, active cytokinin levels were increased in the OX plants. We conclude that OsVIL2 improves the production of biomass and grain by suppressing OsCKX2 chromatin.

Indexed as

BiomassChromatin ImmunoprecipitationEdible GrainGene Expression ProfilingGene Expression Regulation, PlantHomeodomain ProteinsOryzaPlant ProteinsPromoter Regions, GeneticSequence Analysis, RNAHomeodomain ProteinsPlant Proteinsbiomasschromatin interacting factorgrain yieldOsCKX2OsVIL2rice

Identifiers

PMID29851259
PMCPMC6330541
OpenAlexW2807499257

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.