ArticlePlant molecular biology2018
De novo assembly of English yew (Taxus baccata) transcriptome and its applications for intra- and inter-specific analyses.
Article in Plant molecular biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.
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Who cites it
6 citing papers in PubMed, 16 citations in OpenAlex.
- Integrating molecular tools for assessing genetic diversity and conservation strategies for genus Taxus: a global perspective.Biologia futura · 2026Review
- The FORGENIUS Genomic Resources: New Genotyping Tools and Genomic Data for 23 Forest Tree Species and Their Genetic Conservation Units.Molecular ecology resources · 2026Article
- Recent advances inFrontiers in plant science · 2026Review
- Article
- Pharmaceutical resource discovery from traditional medicinal plants: Pharmacophylogeny and pharmacophylogenomics.Chinese herbal medicines · 2020Review
- A multiscale approach to detect selection in nonmodel tree species: Widespread adaptation despite population decline inEvolutionary applications · 2020Article
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Authors and funding
7 authors at 5 institutions in 6 countries.
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Abstract
key messageWe provide novel genomic resources for Taxus baccata in the form of a reference transcriptome, SSR and SNP markers, and orthologous single-copy genes, useful for phylogenomic and population genomic applications. English yew (T. baccata) is the only European representative of the Taxaceae family, a conifer group originated in the Jurassic period. The wide extent of environmental heterogeneity within the species' range, together with its long presence in Europe, make English yew an ideal species to investigate adaptive evolution in conifers. To enlarge the genomic resources available for this species, we used Illumina short read sequencing followed by de novo assembly to build the transcriptome of English yew. In addition to a fully annotated transcriptome as well as large sets of new potential SSR and SNP markers for T. baccata, we provide a data set of orthologous single-copy genes across three Taxus species using Picea sitchensis as outgroup, and discuss ortholog uses and limitations for phylogenomic and population genomic applications.
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Registered trials
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