Evidence map›Paper›PMID 29850926›Full record

ArticleRadiation and environmental biophysics2018

Biodosimetric transcriptional and proteomic changes are conserved in irradiated human tissue.

Simon P Keam, Twishi Gulati, Cristina Gamell, Franco Caramia, Gisela Mir Arnau, Cheng Huang, Ralf B Schittenhelm, Oded Kleifeld, Paul J Neeson, Scott G Williams and 1 more

Abstract read
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Article in Radiation and environmental biophysics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Simon P KeamTumor Suppression Laboratory, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia. Simon.Keam@petermac.org.ORCID http://orcid.org/0000-0001-9053-9138
Twishi GulatiTumor Suppression Laboratory, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Cristina GamellTumor Suppression Laboratory, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Franco CaramiaTumor Suppression Laboratory, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Gisela Mir ArnauMolecular Genomics Facility, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Cheng HuangMonash Biomedical Proteomics Facility, Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University, Clayton, VIC, Australia.
Ralf B SchittenhelmMonash Biomedical Proteomics Facility, Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University, Clayton, VIC, Australia.
Oded KleifeldThe Smoler Proteomics Center Technion, Israel Institute of Technology, Haifa, Israel.
Paul J NeesonThe Sir Peter MacCallum Department of Oncology, The University of Melbourne, Melbourne, VIC, Australia.
Scott G WilliamsDivision of Radiation Oncology and Cancer Imaging, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Ygal HauptTumor Suppression Laboratory, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transcriptional dosimetry is an emergent field of radiobiology aimed at developing robust methods for detecting and quantifying absorbed doses using radiation-induced fluctuations in gene expression. A combination of RNA sequencing, array-based and quantitative PCR transcriptomics in cellular, murine and various ex vivo human models has led to a comprehensive description of a fundamental set of genes with demonstrable dosimetric qualities. However, these are yet to be validated in human tissue due to the scarcity of in situ-irradiated source material. This represents a major hurdle to the continued development of transcriptional dosimetry. In this study, we present a novel evaluation of a previously reported set of dosimetric genes in human tissue exposed to a large therapeutic dose of radiation. To do this, we evaluated the quantitative changes of a set of dosimetric transcripts consisting of FDXR, BAX, BCL2, CDKN1A, DDB2, BBC3, GADD45A, GDF15, MDM2, SERPINE1, TNFRSF10B, PLK3, SESN2 and VWCE in guided pre- and post-radiation (2 weeks) prostate cancer biopsies from seven patients. We confirmed the prolonged dose-responsivity of most of these transcripts in in situ-irradiated tissue. BCL2, GDF15, and to some extent TNFRSF10B, were markedly unreliable single markers of radiation exposure. Nevertheless, as a full set, these genes reliably segregated non-irradiated and irradiated tissues and predicted radiation absorption on a patient-specific basis. We also confirmed changes in the translated protein product for a small subset of these dosimeters. This study provides the first confirmatory evidence of an existing dosimetric gene set in less-accessible tissues-ensuring peripheral responses reflect tissue-specific effects. Further work will be required to determine if these changes are conserved in different tissue types, post-radiation times and doses.

Indexed as

ProteomicsDose-Response Relationship, RadiationHumansIridium RadioisotopesMaleProstatic NeoplasmsRadiometryTranscription, GeneticIridium-192Iridium RadioisotopesBiodosimeterProstateRadiationTranscriptional

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.