Evidence map›Paper›PMID 29849830›Full record

ArticleCanadian respiratory journal2018

Comparison of Respiratory Pathogen Detection in Upper versus Lower Respiratory Tract Samples Using the BioFire FilmArray Respiratory Panel in the Immunocompromised Host.

Natalya Azadeh, Kenneth K Sakata, Ali Saeed, John J Mullon, Thomas E Grys, Andrew H Limper, Matthew J Binnicker

Open access · goldAbstract readComparative Study
In one paragraph

Article in Canadian respiratory journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Agreement of respiratory viruses' detection between nasopharyngeal swab and bronchoalveolar lavage in adults admitted for pneumonia: a retrospective study.Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases · 2023
    Article
  6. Article
  7. Article
  8. Clinical yield of multiple testing with respiratory pathogen panels.Diagnostic microbiology and infectious disease · 2022
    Article
  9. Impact of FilmArray™ Respiratory Panel testing on the clinical management of pediatric bone marrow transplant patients.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2022
    Article
  10. Article
  11. Bronchoalveolar lavage-based COVID-19 testing in patients with cancer.Hematology/oncology and stem cell therapy · 2021
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Natalya AzadehDepartment of Pulmonary and Critical Care Medicine, Mayo Clinic, Rochester, MN, USA.ORCID 0000-0002-4952-8995
Kenneth K SakataDepartment of Pulmonary and Critical Care Medicine, Mayo Clinic, Rochester, MN, USA.ORCID 0000-0003-3527-1612
Ali SaeedDepartment of Pulmonary and Critical Care Medicine, Mayo Clinic, Rochester, MN, USA.
John J MullonDepartment of Pulmonary and Critical Care Medicine, Mayo Clinic, Rochester, MN, USA.
Thomas E GrysDivision of Clinical Microbiology, Mayo Clinic, Scottsdale, AZ, USA.
Andrew H LimperDepartment of Pulmonary and Critical Care Medicine, Mayo Clinic, Rochester, MN, USA.
Matthew J BinnickerDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, USA.
Mayo Clinic in Florida · USMayo Clinic in Arizona · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: The FilmArray Respiratory Panel (FARP) (BioFire Diagnostics, Inc.) is a multiplex, polymerase chain reaction (PCR) technique that can detect 17 respiratory viruses and 3 bacterial targets in a single reaction. Immunocompromised hosts (ICH) with respiratory illnesses often undergo bronchoscopy with bronchoalveolar lavage (BAL). This prospective study aimed to evaluate the yield and concordance of NP and BAL FARP testing when performed on the same patient concurrently. Methods: From February to December 2016, 125 patients (100 ICH and 25 non-ICH) were enrolled. NP swabs and BAL samples were sent for FARP testing. Results: The yield of the BAL FARP among ICH and non-ICH was 24% (24/100) and 8% (2/25), respectively. The yield of positive NP swabs in ICH was 27% (27/100) versus 4% (1/25) in non-ICH. The majority of patients (89%; 111/125) had concordant results between NP and BAL specimens. Of the 24 ICH patients who had a positive BAL FARP, the majority (79%) had the same pathogen detected from the NP swab. Conclusion: The FARP may be useful in the ICH. Given the high concordance, in patients whom a pathogen is identified on the NP FARP, a FARP performed on BAL will likely yield the same result. However, if the NP FARP is negative, performing the test on a BAL sample may have an incremental yield.

Indexed as

Immunocompromised HostMultiplex Polymerase Chain ReactionAdultAgedAged, 80 and overFemaleHumansMaleMiddle AgedProspective StudiesRespiratory Tract Infections

Identifiers

PMID29849830
PMCPMC5907482
OpenAlexW2796017506

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.