Evidence map›Paper›PMID 29849073›Full record

ArticleScientific reports2018

Loop-mediated Isothermal Amplification-Single Nucleotide Polymorphism Analysis for Detection and Differentiation of Wild-type and Vaccine Strains of Mink Enteritis Virus.

Peng Lin, Honglin Wang, Yuening Cheng, Shanshan Song, Yaru Sun, Miao Zhang, Li Guo, Li Yi, Mingwei Tong, Zhigang Cao and 3 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Loop-mediated isothermal amplification-fluorescent loop primer assay for the genotyping of a single nucleotide polymorphism at position 2254 in the viral DNA polymerase gene of equid alphaherpesvirus 1.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2019
    Article
  10. AS-LAMP: A New and Alternative Method for Genotyping.Avicenna journal of medical biotechnology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Peng LinKey Laboratory of Special Animal Epidemic Disease, Ministry of Agriculture, Changchun, 130112, People's Republic of China.
Honglin WangShandong Sinder Technology Co., Ltd, Zhucheng, Shandong, 262204, People's Republic of China.
Yuening ChengKey Laboratory of Special Animal Epidemic Disease, Ministry of Agriculture, Changchun, 130112, People's Republic of China.
Shanshan SongKey Laboratory of Special Animal Epidemic Disease, Ministry of Agriculture, Changchun, 130112, People's Republic of China.
Yaru SunKey Laboratory of Special Animal Epidemic Disease, Ministry of Agriculture, Changchun, 130112, People's Republic of China.
Miao ZhangKey Laboratory of Special Animal Epidemic Disease, Ministry of Agriculture, Changchun, 130112, People's Republic of China.
Li GuoKey Laboratory of Special Animal Epidemic Disease, Ministry of Agriculture, Changchun, 130112, People's Republic of China.
Li YiKey Laboratory of Special Animal Epidemic Disease, Ministry of Agriculture, Changchun, 130112, People's Republic of China.
Mingwei TongKey Laboratory of Special Animal Epidemic Disease, Ministry of Agriculture, Changchun, 130112, People's Republic of China.
Zhigang CaoKey Laboratory of Special Animal Epidemic Disease, Ministry of Agriculture, Changchun, 130112, People's Republic of China.
Shuang LiKey Laboratory of Special Animal Epidemic Disease, Ministry of Agriculture, Changchun, 130112, People's Republic of China.
Shipeng ChengKey Laboratory of Special Animal Epidemic Disease, Ministry of Agriculture, Changchun, 130112, People's Republic of China.
Jianke WangKey Laboratory of Special Animal Epidemic Disease, Ministry of Agriculture, Changchun, 130112, People's Republic of China. wangjianke@caas.cn.ORCID 0000-0001-5370-7235
Jilin University · CNZoucheng People's Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Broad coverage of mink enteritis virus (MEV) vaccination program in northeast of China has provided effective protection from mink viral enteritis. Nevertheless, MEV vaccine failures were reported due to continually evolving and changing virulence of field variants or wild-type MEV. In this study, a combined loop-mediated isothermal amplification (LAMP) and single nucleotide polymorphism (SNP) method, named LAMP-SNP assay, was developed for detection and differentiation of wild-type and vaccine strains of MEV. Four primers in MEV-VP2-LAMP were used to detect both wild-type and vaccine strains of MEV in our previous publication, and other four primers in LAMP-SNP were designed to amplify the NS1 gene in wild-type MEV and only used to detect wild-type viruses. The LAMP-SNP assay was performed in a water bath held at a constant temperature of 65 °C for 60 min. LAMP-SNP amplification can be judged by both electrophoresis and visual assessment with the unaided eyes. In comparison with virus isolation as the gold standard in testing 171 mink samples, the percentage of agreement and relative sensitivity and specificity of the LAMP-SNP assay were 97.1, 100%, and 94.0%, respectively. There were no cross-reactions with other mink viruses. The LAMP-SNP assay was found to be a rapid, reliable and low-cost method to differentiate MEV vaccine and field variant strains.

Indexed as

Nucleic Acid Amplification TechniquesPolymorphism, Single NucleotideAnimalsLimit of DetectionMink enteritis virusTime FactorsViral VaccinesViral Vaccines

Identifiers

PMID29849073
PMCPMC5976767
OpenAlexW2807011878

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.