Evidence map›Paper›PMID 29847550›Full record

ArticlePloS one2018

Peripheral infrastructure vectors and an extended set of plant parts for the Modular Cloning system.

Johannes Gantner, Jana Ordon, Theresa Ilse, Carola Kretschmer, Ramona Gruetzner, Christian Löfke, Yasin Dagdas, Katharina Bürstenbinder, Sylvestre Marillonnet, Johannes Stuttmann

Abstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Assembling DNA Plasmids with the Multi-Kingdom (MK) Cloning System.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  6. Golden Gate Cloning of MoClo Standard Parts.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  7. Live Single-Cell Transcriptional Dynamics in Plant Cells.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  8. Article
  9. Article
  10. EngineeringFrontiers in plant science · 2024
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Systematic Comparison of Plant Promoters inInternational journal of molecular sciences · 2022
    Article
  17. Review
  18. Article
  19. Article
  20. Rapid Affinity Purification of Tagged Plant Mitochondria (Mito-AP).Methods in molecular biology (Clifton, N.J.) · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Johannes GantnerInstitute for Biology, Department of Plant Genetics, Martin Luther University Halle (Saale), Halle, Germany.
Jana OrdonInstitute for Biology, Department of Plant Genetics, Martin Luther University Halle (Saale), Halle, Germany.
Theresa IlseInstitute for Biology, Department of Plant Genetics, Martin Luther University Halle (Saale), Halle, Germany.
Carola KretschmerInstitute for Biology, Department of Plant Genetics, Martin Luther University Halle (Saale), Halle, Germany.
Ramona GruetznerDepartment of Cell and Metabolic Biology, Leibniz Institute of Plant Biochemistry, Halle (Saale), Germany.
Christian LöfkeGregor Mendel Institute (GMI), Austrian Academy of Sciences, Vienna BioCenter (VBC), Vienna, Austria.
Yasin DagdasGregor Mendel Institute (GMI), Austrian Academy of Sciences, Vienna BioCenter (VBC), Vienna, Austria.
Katharina BürstenbinderDepartment of Molecular Signal Processing, Leibniz Institute of Plant Biochemistry, Halle (Saale), Germany.
Sylvestre MarillonnetDepartment of Cell and Metabolic Biology, Leibniz Institute of Plant Biochemistry, Halle (Saale), Germany.
Johannes StuttmannInstitute for Biology, Department of Plant Genetics, Martin Luther University Halle (Saale), Halle, Germany.ORCID 0000-0002-6207-094X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Standardized DNA assembly strategies facilitate the generation of multigene constructs from collections of building blocks in plant synthetic biology. A common syntax for hierarchical DNA assembly following the Golden Gate principle employing Type IIs restriction endonucleases was recently developed, and underlies the Modular Cloning and GoldenBraid systems. In these systems, transcriptional units and/or multigene constructs are assembled from libraries of standardized building blocks, also referred to as phytobricks, in several hierarchical levels and by iterative Golden Gate reactions. Here, a toolkit containing further modules for the novel DNA assembly standards was developed. Intended for use with Modular Cloning, most modules are also compatible with GoldenBraid. Firstly, a collection of approximately 80 additional phytobricks is provided, comprising e.g. modules for inducible expression systems, promoters or epitope tags. Furthermore, DNA modules were developed for connecting Modular Cloning and Gateway cloning, either for toggling between systems or for standardized Gateway destination vector assembly. Finally, first instances of a "peripheral infrastructure" around Modular Cloning are presented: While available toolkits are designed for the assembly of plant transformation constructs, vectors were created to also use coding sequence-containing phytobricks directly in yeast two hybrid interaction or bacterial infection assays. The presented material will further enhance versatility of hierarchical DNA assembly strategies.

Indexed as

Agrobacterium tumefaciensArabidopsisArabidopsis ProteinsBase SequenceCalmodulinCarboxylic Ester HydrolasesCloning, MolecularDNA-Binding ProteinsGene ExpressionGenetic EngineeringGenetic VectorsNicotianaOpen Reading FramesPlant LeavesPlant ProteinsPlants, Genetically ModifiedArabidopsis ProteinsCalmodulinCarboxylic Ester HydrolasesDNA-Binding ProteinsEDS1 protein, ArabidopsisPAD4 protein, ArabidopsisPlant ProteinsRecombinant ProteinsType III Secretion Systems

Identifiers

PMID29847550
PMCPMC5976141

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.