Evidence map›Paper›PMID 29847124›Full record

ArticleThe journal of physical chemistry. A2018

Binding of Divalent Metal Ions with Deprotonated Peptides: Do Gas-Phase Anions Parallel the Condensed Phase?

Robert C Dunbar, Jonathan Martens, Giel Berden, Jos Oomens

Abstract read
In one paragraph

Article in The journal of physical chemistry. A, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Rapid and Green Anion-Assisted Mechanochemical Peptide Cyclization.ACS sustainable chemistry & engineering · 2025
    Article
  3. Article
  4. The effect of an engineered ATCUN motif on the structure and biophysical properties of the SH3 domain of c-Src tyrosine kinase.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2020
    Article
  5. Review
4 · The record

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5 · Who and what money

Authors and funding

4 authors.

Robert C DunbarChemistry Department , Case Western Reserve University , Cleveland , Ohio 44106 , United States.
Jonathan MartensRadboud University, Institute for Molecules and Materials , FELIX Laboratory , Toernooiveld 7c , 6525ED Nijmegen , The Netherlands.ORCID http://orcid.org/0000-0001-9537-4117
Giel BerdenRadboud University, Institute for Molecules and Materials , FELIX Laboratory , Toernooiveld 7c , 6525ED Nijmegen , The Netherlands.ORCID http://orcid.org/0000-0003-1500-922X
Jos OomensRadboud University, Institute for Molecules and Materials , FELIX Laboratory , Toernooiveld 7c , 6525ED Nijmegen , The Netherlands.ORCID http://orcid.org/0000-0002-2717-1278

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chelation complexes of the histidine-containing tripeptides HisAlaAla, AlaHisAla, and AlaAlaHis with Ni(II) and Cu(II) having a -1 net charge are characterized in the gas phase by infrared multiple-photon dissociation (IRMPD) spectroscopy and density functional theory calculations. We address the question of whether the gas-phase complexes carry over characteristics from the corresponding condensed-phase species. We focus particularly on three aspects of their structure: (i) square-planar chelation by the deprotonated amide nitrogens around the metal ion (low-spin for the Ni case), (ii) metal-ion coordination of the imidazole side chain nitrogen, and (iii) the exceptional preference for metal-ion chelation by peptides with His in the third position from the N-terminus, as in the amino terminal Cu and Ni (ATCUN) motif. We find that square-planar binding around the metal ion, involving bonds to both deprotonated backbone nitrogens, one of the carboxylate oxygens and the N-terminal nitrogen, is the dominant binding motif for all three isomers. In contrast to the condensed-phase behavior, the dominant mode of binding for all three isomers does not involve the imidazole side chain, which is instead placed outside the coordination zone. Only for the AlaAlaHis isomer, the imidazole-bound structure is also detected as a minority population, as identified from a distinctive short-wavelength IR absorption. The observation that this conformation exists only for AlaAlaHis correlates with condensed-phase behavior at neutral-to-basic pH, in the sense that the isomer with His in the third position is exceptionally disposed to metal ion chelation by four nitrogen atoms (4N) when compared with the other isomers. These results also emphasize the divergence between the conformational stabilities in the gas phase and in solution or crystalline environments: in the gas phase, direct metal binding of the imidazole is overall less favorable than the alternative of a remote imidazole that can act as an intramolecular H-bond donor enhancing the gas-phase stability.

Identifiers

PMID29847124
PMCPMC6026845

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