Evidence map›Paper›PMID 29845372›Full record

ArticleJournal of plant research2018

Biosynthesis of riccionidins and marchantins is regulated by R2R3-MYB transcription factors in Marchantia polymorpha.

Hiroyoshi Kubo, Shunsuke Nozawa, Takuma Hiwatashi, Youichi Kondou, Ryo Nakabayashi, Tetsuya Mori, Kazuki Saito, Kojiro Takanashi, Takayuki Kohchi, Kimitsune Ishizaki

Abstract read
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In one paragraph

Article in Journal of plant research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 66 citations in OpenAlex.

  1. Article
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  9. Development of phytochemical genomics: From decoding metabolome to functional genomics and biotechnology of plant metabolism.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2025
    Review
  10. The evolution of flavonoid biosynthesis.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  11. Article
  12. Article
  13. DELLA proteins recruit the Mediator complex subunit MED15 to coactivate transcription in land plants.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  14. The monoicous secondarily aquatic liverwortFrontiers in plant science · 2023
    Article
  15. Article
  16. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 1 country.

Hiroyoshi KuboDepartment of Biology, Faculty of Science, Shinshu University, Matsumoto, 390-8621, Japan. hkubo77@shinshu-u.ac.jp.
Shunsuke NozawaDepartment of Biology, Faculty of Science, Shinshu University, Matsumoto, 390-8621, Japan.
Takuma HiwatashiGraduate School of Science, Kobe University, Kobe, 657-8501, Japan.
Youichi KondouCollege of Science and Engineering, Kanto Gakuin University, Yokohama, 236-8501, Japan.
Ryo NakabayashiCenter for Sustainable Resource Science, RIKEN, Yokohama, 230-0045, Japan.
Tetsuya MoriCenter for Sustainable Resource Science, RIKEN, Yokohama, 230-0045, Japan.
Kazuki SaitoCenter for Sustainable Resource Science, RIKEN, Yokohama, 230-0045, Japan.
Kojiro TakanashiDepartment of Biology, Faculty of Science, Shinshu University, Matsumoto, 390-8621, Japan.
Takayuki KohchiGraduate School of Biostudies, Kyoto University, Kyoto, 606-8502, Japan.
Kimitsune IshizakiGraduate School of Science, Kobe University, Kobe, 657-8501, Japan.
Shinshu University · JPKobe University · JPRIKEN Center for Sustainable Resource Science · JPChiba University · JPKanto Gakuin University · JPKyoto University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

R2R3-MYB transcription factors constitute the largest gene family among plant transcription factor families. They became largely divergent during the evolution of land plants and regulate various biological processes. The functions of R2R3-MYBs are mostly characterized in seed plants but are poorly understood in non-seed plants. Here, we examined the function of two R2R3-MYB genes of Marchantia polymorpha (Mapoly0073s0038 and Mapoly0006s0226) that are closely related to subgroup 4 of the R2R3-MYB family. We performed LC/MS/MS metabolomics, RNA-seq analysis and expression analysis in overexpressors and knockout mutants of MpMYB14 and MpMYB02. Overexpression of MpMYB14 remarkably increased the amount of riccionidins, which are specific anthocyanins in liverworts and a few flowering plants. In contrast, overexpression of MpMYB02 increased the amount of several marchantins, which are characteristic cyclic bis (bibenzyl ether) compounds in M. polymorpha and related liverworts. Knockouts of MpMYB14 and MpMYB02 abolished the accumulation of riccionidins and marchantins, respectively. The expression of MpMYB14 was up-regulated by UV-B irradiation, N deficiency, and NaCl treatment, whereas the expression of MpMYB02 was down-regulated by NaCl treatment. Our results suggest that the regulatory framework of phenolic metabolism by R2R3-MYB was already established in early land plants.

Indexed as

AnthocyaninsChromatography, LiquidDown-RegulationGene Expression Regulation, PlantMarchantiaPhenolPlant ProteinsTandem Mass SpectrometryTranscription FactorsUltraviolet RaysUp-RegulationAnthocyaninsPhenolPlant ProteinsTranscription FactorsAnthocyaninMarchantia polymorphaMarchantinPhenolic metabolismR2R3-MYB

Identifiers

PMID29845372
OpenAlexW2806026631

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.