Evidence map›Paper›PMID 29844575›Full record

ArticleNature communications2018

Conformation and dynamics of soluble repetitive domain elucidates the initial β-sheet formation of spider silk.

Nur Alia Oktaviani, Akimasa Matsugami, Ali D Malay, Fumiaki Hayashi, David L Kaplan, Keiji Numata

Abstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. Phosphate- and pH-dependent self-assembly of recombinant spider silk proteins.Protein science : a publication of the Protein Society · 2026
    Article
  3. Spider silk-based structural proteins as tough, biodegradable, and sustainable polymers.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2026
    Review
  4. Nanostructured Protein Surfaces Inspired by Spider Silk.Advanced materials (Deerfield Beach, Fla.) · 2025
    Review
  5. Article
  6. Article
  7. Manipulating the Assembly and Architecture of Fibrillar Silk.Advanced materials (Deerfield Beach, Fla.) · 2025
    Article
  8. Review
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Unusual pBiomacromolecules · 2023
    Article
  15. Review
  16. Complexity of Spider Dragline Silk.Biomacromolecules · 2022
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Nur Alia OktavianiBiomacromolecules Research Team, RIKEN Center for Sustainable Resource Science, 529 5F Main Research Building, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan.
Akimasa MatsugamiAdvanced NMR Application and Platform Team, NMR Research and Collaboration Group, NMR Science and Development Division, RIKEN SPring-8 Center, Yokohama, 1-7-22 Suehiro-cho, Tsurumi-ku, Kanagawa, 230-0045, Japan.
Ali D MalayBiomacromolecules Research Team, RIKEN Center for Sustainable Resource Science, 529 5F Main Research Building, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan.
Fumiaki HayashiAdvanced NMR Application and Platform Team, NMR Research and Collaboration Group, NMR Science and Development Division, RIKEN SPring-8 Center, Yokohama, 1-7-22 Suehiro-cho, Tsurumi-ku, Kanagawa, 230-0045, Japan.
David L KaplanDepartment of Biomedical Engineering, Tufts University, 4 Colby Street, Medford, MA, 02155, USA.ORCID http://orcid.org/0000-0002-9245-7774
Keiji NumataBiomacromolecules Research Team, RIKEN Center for Sustainable Resource Science, 529 5F Main Research Building, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan. keiji.numata@riken.jp.ORCID http://orcid.org/0000-0003-2199-7420

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The β-sheet is the key structure underlying the excellent mechanical properties of spider silk. However, the comprehensive mechanism underlying β-sheet formation from soluble silk proteins during the transition into insoluble stable fibers has not been elucidated. Notably, the assembly of repetitive domains that dominate the length of the protein chains and structural features within the spun fibers has not been clarified. Here we determine the conformation and dynamics of the soluble precursor of the repetitive domain of spider silk using solution-state NMR, far-UV circular dichroism and vibrational circular dichroism. The soluble repetitive domain contains two major populations: ~65% random coil and ~24% polyproline type II helix (PPII helix). The PPII helix conformation in the glycine-rich region is proposed as a soluble prefibrillar region that subsequently undergoes intramolecular interactions. These findings unravel the mechanism underlying the initial step of β-sheet formation, which is an extremely rapid process during spider silk assembly.

Indexed as

AnimalsCircular DichroismMagnetic Resonance SpectroscopyProtein Conformation, beta-StrandSilkSpidersStress, MechanicalTensile StrengthSilk

Identifiers

PMID29844575
PMCPMC5974136

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.