Evidence map›Paper›PMID 29844480›Full record

ArticleScientific reports2018

Asymmetric distribution of biomolecules of maternal origin in the Xenopus laevis egg and their impact on the developmental plan.

Radek Sindelka, Pavel Abaffy, Yanyan Qu, Silvie Tomankova, Monika Sidova, Ravindra Naraine, Michal Kolar, Elizabeth Peuchen, Liangliang Sun, Norman Dovichi and 1 more

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. RNA localization during early development of the axolotl.Frontiers in cell and developmental biology · 2023
    Article
  6. Article
  7. Comparison of RNA localization during oogenesis withinFrontiers in cell and developmental biology · 2022
    Article
  8. Article
  9. NormQ: RNASeq normalization based on RT-qPCR derived size factors.Computational and structural biotechnology journal · 2020
    Article
  10. Article
  11. Article
  12. Methodological improvements for fluorescence recordings inThe Journal of general physiology · 2019
    Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Radek SindelkaInstitute of Biotechnology of the Czech Academy of Sciences - BIOCEV, Prumyslova 595, Vestec, 252 50, Czech Republic. Radek.Sindelka@ibt.cas.cz.
Pavel AbaffyInstitute of Biotechnology of the Czech Academy of Sciences - BIOCEV, Prumyslova 595, Vestec, 252 50, Czech Republic.
Yanyan QuDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN, 46556, USA.
Silvie TomankovaInstitute of Biotechnology of the Czech Academy of Sciences - BIOCEV, Prumyslova 595, Vestec, 252 50, Czech Republic.
Monika SidovaInstitute of Biotechnology of the Czech Academy of Sciences - BIOCEV, Prumyslova 595, Vestec, 252 50, Czech Republic.
Ravindra NaraineInstitute of Biotechnology of the Czech Academy of Sciences - BIOCEV, Prumyslova 595, Vestec, 252 50, Czech Republic.
Michal KolarInstitute of Molecular Genetics, Videnska 1083, 142 20, Prague 4, Czech Republic.
Elizabeth PeuchenDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN, 46556, USA.
Liangliang SunDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN, 46556, USA.
Norman DovichiDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN, 46556, USA.
Mikael KubistaInstitute of Biotechnology of the Czech Academy of Sciences - BIOCEV, Prumyslova 595, Vestec, 252 50, Czech Republic.

Funding

Interactions Regulating Translation and Protein Biogenesis in VivoU54GM105816 · NIGMS · UNIVERSITY OF NOTRE DAME · PI BUSKIRK, ALLEN ROWDON, CLARK, PATRICIA LOUISE · 2013 to 2017
$3.7M
Technology for single cell proteomics and its application to the analysis of single Xenopus blastomeresR01GM096767 · NIGMS · UNIVERSITY OF NOTRE DAME · PI DOVICHI, NORMAN J · 2011 to 2019
$2.5M
Quantitative proteomics of Xenopus oocytes, eggs, blastomeres, and nuclear transplantsR01HD084399 · NICHD · UNIVERSITY OF NOTRE DAME · PI DOVICHI, NORMAN J · 2015 to 2019
$1.6M
NICHD NIH HHS R01 HD084399NIGMS NIH HHS R01 GM096767NIGMS NIH HHS U54 GM105816
6 · The paper itself

Abstract

Asymmetric cell division is a ubiquitous feature during the development of higher organisms. Asymmetry is achieved by differential localization or activities of biological molecules such as proteins, and coding and non-coding RNAs. Here, we present subcellular transcriptomic and proteomic analyses along the animal-vegetal axis of Xenopus laevis eggs. More than 98% of the maternal mRNAs could be categorized into four localization profile groups: animal, vegetal, extremely vegetal, and a newly described group of mRNAs that we call extremely animal, which are mRNAs enriched in the animal cortex region. 3'UTRs of localized mRNAs were analyzed for localization motifs. Several putative motifs were discovered for vegetal and extremely vegetal mRNAs, while no distinct conserved motifs for the extremely animal mRNAs were identified, suggesting different localization mechanisms. Asymmetric profiles were also found for proteins, with correlation to those of corresponding mRNAs. Based on unexpected observation of the profiles of the homoeologous genes exd2 we propose a possible mechanism of genetic evolution.

Indexed as

3' Untranslated RegionsAnimalsFemaleXenopus laevis3' Untranslated Regions

Identifiers

PMID29844480
PMCPMC5974320

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.