Evidence map›Paper›PMID 29844400›Full record

ArticleScientific reports2018

C-terminal intrinsically disordered region-dependent organization of the mycobacterial genome by a histone-like protein.

Anna Savitskaya, Akihito Nishiyama, Takehiro Yamaguchi, Yoshitaka Tateishi, Yuriko Ozeki, Masaaki Nameta, Tomohiro Kon, Shaban A Kaboso, Naoya Ohara, Olga V Peryanova and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Evaluation of cytokine profiles related toFrontiers in immunology · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Transcription of Bacterial Chromatin.Journal of molecular biology · 2019
    Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Anna SavitskayaDepartment of Bacteriology, Niigata University School of Medicine, Niigata, Japan.
Akihito NishiyamaDepartment of Bacteriology, Niigata University School of Medicine, Niigata, Japan. anishi@med.niigata-u.ac.jp.
Takehiro YamaguchiDepartment of Bacteriology, Niigata University School of Medicine, Niigata, Japan.
Yoshitaka TateishiDepartment of Bacteriology, Niigata University School of Medicine, Niigata, Japan.
Yuriko OzekiDepartment of Bacteriology, Niigata University School of Medicine, Niigata, Japan.
Masaaki NametaElectron Microscope Core Facility, Niigata University, Niigata, Japan.
Tomohiro KonDepartment of Bacteriology, Niigata University School of Medicine, Niigata, Japan.
Shaban A KabosoDepartment of Bacteriology, Niigata University School of Medicine, Niigata, Japan.
Naoya OharaDepartment of Oral Microbiology, Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama, Japan.
Olga V PeryanovaRussia-Japan Center of Microbiology, Epidemiology and Infectious Diseases, Krasnoyarsk State Medical University, Krasnoyarsk, Russia.
Sohkichi MatsumotoDepartment of Bacteriology, Niigata University School of Medicine, Niigata, Japan. sohkichi@med.niigata-u.ac.jp.
Niigata University · JPKrasnoyarsk State Medical University · RUOkayama University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The architecture of the genome influences the functions of DNA from bacteria to eukaryotes. Intrinsically disordered regions (IDR) of eukaryotic histones have pivotal roles in various processes of gene expression. IDR is rare in bacteria, but interestingly, mycobacteria produce a unique histone-like protein, MDP1 that contains a long C-terminal IDR. Here we analyzed the role of IDR in MDP1 function. By employing Mycobacterium smegmatis that inducibly expresses MDP1 or its IDR-deficient mutant, we observed that MDP1 induces IDR-dependent DNA compaction. MDP1-IDR is also responsible for the induction of growth arrest and tolerance to isoniazid, a front line tuberculosis drug that kills growing but not growth-retardated mycobacteria. We demonstrated that MDP1-deficiency and conditional knock out of MDP1 cause spreading of the M. smegmatis genome in the stationary phase. This study thus demonstrates for the first time a C-terminal region-dependent organization of the genome architecture by MDP1, implying the significance of IDR in the function of bacterial histone-like protein.

Indexed as

Genome, BacterialAmino Acid SequenceBacterial ProteinsDNA-Binding ProteinsDNA ReplicationGene DeletionGene ExpressionHistonesHumansIntrinsically Disordered ProteinsMycobacterium Infections, NontuberculousMycobacterium smegmatisBacterial ProteinsDNA-Binding ProteinsHistonesIntrinsically Disordered ProteinsMDP1 protein, Mycobacterium

Identifiers

PMID29844400
PMCPMC5974015
OpenAlexW2807673692

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.