Evidence map›Paper›PMID 29844330›Full record

ArticleScientific reports2018

Molecular Diagnosis of 34 Japanese Families with Leber Congenital Amaurosis Using Targeted Next Generation Sequencing.

Katsuhiro Hosono, Sachiko Nishina, Tadashi Yokoi, Satoshi Katagiri, Hirotomo Saitsu, Kentaro Kurata, Daisuke Miyamichi, Akiko Hikoya, Kei Mizobuchi, Tadashi Nakano and 7 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. Ocular genetics in the Japanese population.Japanese journal of ophthalmology · 2024
    Review
  3. Article
  4. The Structural Abnormalities Are Deeply Involved in the Cause ofInternational journal of molecular sciences · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 1 country.

Katsuhiro HosonoDepartment of Ophthalmology, Hamamatsu University School of Medicine, Shizuoka, Japan.
Sachiko NishinaDepartment of Ophthalmology and Laboratory for Visual Science, National Center for Child Health and Development, Tokyo, Japan.
Tadashi YokoiDepartment of Ophthalmology and Laboratory for Visual Science, National Center for Child Health and Development, Tokyo, Japan.
Satoshi KatagiriDepartment of Ophthalmology and Laboratory for Visual Science, National Center for Child Health and Development, Tokyo, Japan.ORCID 0000-0001-7787-8194
Hirotomo SaitsuDepartment of Biochemistry, Hamamatsu University School of Medicine, Shizuoka, Japan.ORCID 0000-0003-0723-0960
Kentaro KurataDepartment of Ophthalmology, Hamamatsu University School of Medicine, Shizuoka, Japan.
Daisuke MiyamichiDepartment of Ophthalmology, Hamamatsu University School of Medicine, Shizuoka, Japan.
Akiko HikoyaDepartment of Ophthalmology, Hamamatsu University School of Medicine, Shizuoka, Japan.
Kei MizobuchiDepartment of Ophthalmology, The Jikei University School of Medicine, Tokyo, Japan.
Tadashi NakanoDepartment of Ophthalmology, The Jikei University School of Medicine, Tokyo, Japan.
Shinsei MinoshimaDepartment of Photomedical Genomics, Institute for Medical Photonics Research, Preeminent Medical Photonics Education & Research Center, Hamamatsu University School of Medicine, Shizuoka, Japan.
Maki FukamiDepartment of Molecular Endocrinology, National Research Institute for Child Health and Development, Tokyo, Japan.ORCID 0000-0001-9971-4035
Hiroyuki KondoDepartment of Ophthalmology, University of Occupational and Environmental Health, Fukuoka, Japan.ORCID 0000-0002-3194-152X
Miho SatoDepartment of Ophthalmology, Hamamatsu University School of Medicine, Shizuoka, Japan.
Takaaki HayashiDepartment of Ophthalmology, The Jikei University School of Medicine, Tokyo, Japan.
Noriyuki AzumaDepartment of Ophthalmology and Laboratory for Visual Science, National Center for Child Health and Development, Tokyo, Japan.
Yoshihiro HottaDepartment of Ophthalmology, Hamamatsu University School of Medicine, Shizuoka, Japan. hotta@hama-med.ac.jp.
Hamamatsu University School of Medicine · JPJikei University School of Medicine · JPNational Center For Child Health and Development · JPHamamatsu University · JPUniversity of Occupational and Environmental Health Japan · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Leber congenital amaurosis (LCA) is a genetically and clinically heterogeneous disease, and represents the most severe form of inherited retinal dystrophy (IRD). The present study reports the mutation spectra and frequency of known LCA and IRD-associated genes in 34 Japanese families with LCA (including three families that were previously reported). A total of 74 LCA- and IRD-associated genes were analysed via targeted-next generation sequencing (TS), while recently discovered LCA-associated genes, as well as known variants not able to be screened using this approach, were evaluated via additional Sanger sequencing, long-range polymerase chain reaction, and/or copy number variation analyses. The results of these analyses revealed 30 potential pathogenic variants in 12 (nine LCA-associated and three other IRD-associated) genes among 19 of the 34 analysed families. The most frequently mutated genes were CRB1, NMNAT1, and RPGRIP1. The results also showed the mutation spectra and frequencies identified in the analysed Japanese population to be distinctly different from those previously identified for other ethnic backgrounds. Finally, the present study, which is the first to conduct a NGS-based molecular diagnosis of a large Japanese LCA cohort, achieved a detection rate of approximately 56%, indicating that TS is a valuable method for molecular diagnosis of LCA cases in the Japanese population.

Indexed as

AdolescentAdultAgedChildCytoskeletal ProteinsDNA Copy Number VariationsDNA Mutational AnalysisExomeEye ProteinsFamilyFemaleHigh-Throughput Nucleotide SequencingHumansJapanLeber Congenital AmaurosisMaleCRB1 protein, humanCytoskeletal ProteinsEye ProteinsMembrane ProteinsNerve Tissue ProteinsNicotinamide-Nucleotide AdenylyltransferaseNMNAT1 protein, humanProteinsRPGRIP1 protein, human

Identifiers

PMID29844330
PMCPMC5974356
OpenAlexW2805616173

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.