Evidence map›Paper›PMID 29844229›Full record

ArticlePlant physiology2018

Reproductive Long Intergenic Noncoding RNAs Exhibit Male Gamete Specificity and Polycomb Repressive Complex 2-Mediated Repression.

Cameron Johnson, Liza J Conrad, Ravi Patel, Sarah Anderson, Chenxin Li, Andy Pereira, Venkatesan Sundaresan

Open access · greenAbstract read
In one paragraph

Article in Plant physiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Article
  3. Epigenetic modifications: Allusive clues of lncRNA functions in plants.Computational and structural biotechnology journal · 2023
    Review
  4. Article
  5. Review
  6. Article
  7. Understanding epigenomics based on the rice model.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Review
  8. Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Cameron JohnsonPlant Biology Department, University of California, Davis, California 95616 camjohnson@ucdavis.edu.ORCID 0000-0003-0533-6833
Liza J ConradPlant Biology Department, University of California, Davis, California 95616.
Ravi PatelPlant Biology Department, University of California, Davis, California 95616.
Sarah AndersonPlant Biology Department, University of California, Davis, California 95616.ORCID 0000-0002-1671-2286
Chenxin LiPlant Biology Department, University of California, Davis, California 95616.
Andy PereiraDepartments of Crop, Soil, and Environmental Sciences and Plant Pathology, University of Arkansas, Fayetteville, Arkansas 72701.ORCID 0000-0003-1378-4273
Venkatesan SundaresanPlant Biology Department, University of California, Davis, California 95616.
University of California, Davis · US

Funding

Genome Sequencer FLXS10RR029668 · NCRR · UNIVERSITY OF CALIFORNIA BERKELEY · PI NGAI, JOHN J. · 2010 to 2010
$623k
Pacific Biosciences PacBio RS Single Molecule Real Time SequencerS10OD018174 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI ROKHSAR, DANIEL SOLEYMAN · 2014 to 2014
$600k
Illumina Sequencer to Facilitate Functional Genomics at BerkeleyS10RR027303 · NCRR · UNIVERSITY OF CALIFORNIA BERKELEY · PI TAYLOR, JOHN W. · 2010 to 2010
$500k
NCRR NIH HHS S10 RR027303NCRR NIH HHS S10 RR029668NIH HHS S10 OD018174
6 · The paper itself

Abstract

Long noncoding RNAs (lncRNAs) have been characterized extensively in animals and are involved in several processes, including homeobox gene expression and X-chromosome inactivation. In comparison, there has been much less detailed characterization of plant lncRNAs, and the number of distinct lncRNAs encoded in plant genomes and their regulation by developmental and epigenetic mechanisms remain largely unknown. Here, we analyzed transcriptome data from Asian rice (

Indexed as

Base SequenceBrachypodiumChromatinConserved SequenceDroughtsEpigenetic RepressionGene Expression Regulation, PlantMethylationOryzaPollenPolycomb Repressive Complex 2RNA, Long NoncodingRNA, PlantSequence AlignmentSupport Vector MachineChromatinPolycomb Repressive Complex 2RNA, Long NoncodingRNA, Plant

Identifiers

PMID29844229
PMCPMC6053002
OpenAlexW2807555625

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.