Evidence map›Paper›PMID 29844065›Full record

ArticleMolecular and cellular biology2018

The Interaction between the Ribosomal Stalk Proteins and Translation Initiation Factor 5B Promotes Translation Initiation.

Ryo Murakami, Chingakham Ranjit Singh, Jacob Morris, Leiming Tang, Ian Harmon, Azuma Takasu, Tomohiro Miyoshi, Kosuke Ito, Katsura Asano, Toshio Uchiumi

Abstract read
In one paragraph

Article in Molecular and cellular biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Archaea/eukaryote-specific ribosomal proteins - guardians of a complex structure.Computational and structural biotechnology journal · 2023
    Review
  8. Article
  9. Review
  10. Article
  11. Direct visualization of translational GTPase factor pool formed around the archaeal ribosomal P-stalk by high-speed AFM.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  12. Article
  13. Review
  14. Transcriptomic Analysis of TwoFrontiers in microbiology · 2020
    Article
  15. Article
  16. Towards a model of GCN2 activation.Biochemical Society transactions · 2019
    Review
  17. Article
  18. Review
  19. Activation of GCN2 by the ribosomal P-stalk.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Ryo Murakami *Department of Biology, Faculty of Science, Niigata University, Niigata, Japan.
Chingakham Ranjit Singh *Molecular, Cellular, and Developmental Biology Program, Division of Biology, Kansas State University, Manhattan, Kansas, USA.
Jacob MorrisMolecular, Cellular, and Developmental Biology Program, Division of Biology, Kansas State University, Manhattan, Kansas, USA.
Leiming TangMolecular, Cellular, and Developmental Biology Program, Division of Biology, Kansas State University, Manhattan, Kansas, USA.
Ian HarmonMolecular, Cellular, and Developmental Biology Program, Division of Biology, Kansas State University, Manhattan, Kansas, USA.
Azuma TakasuMolecular, Cellular, and Developmental Biology Program, Division of Biology, Kansas State University, Manhattan, Kansas, USA.
Tomohiro MiyoshiDepartment of Biology, Faculty of Science, Niigata University, Niigata, Japan.
Kosuke ItoDepartment of Biology, Faculty of Science, Niigata University, Niigata, Japan k-ito@bio.sc.niigata-u.ac.jp kasano@ksu.edu.
Katsura AsanoMolecular, Cellular, and Developmental Biology Program, Division of Biology, Kansas State University, Manhattan, Kansas, USA k-ito@bio.sc.niigata-u.ac.jp kasano@ksu.edu.
Toshio UchiumiDepartment of Biology, Faculty of Science, Niigata University, Niigata, Japan.
Kansas State University · USNiigata University · JP

Funding

Mentoring CoreP20GM103418 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI SUSAN J. BROWN · 2012 to 2026
$63.0M
UNDERSTANDING THE ROLE OF SMALL RNAS IN ARABIDOPSIS POLLEN DEVELOPMENTP20RR016475 · NCRR · UNIVERSITY OF KANSAS MEDICAL CENTER · PI ACKLEY, BRIAN DOUGLAS · 2001 to 2011
$38.1M
Protein Structure Laboratory P30GM110761 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI HANZLIK, ROBERT P · 2014 to 2018
$5.6M
Studies on start codon selection by eukaryotic ribosomesR01GM064781 · NIGMS · KANSAS STATE UNIVERSITY · PI ASANO, KATSURA · 2002 to 2010
$2.4M
The role of translational control in metabolic stress responseR15GM124671 · NIGMS · KANSAS STATE UNIVERSITY · PI ASANO, KATSURA · 2017 to 2020
$899k
NCRR NIH HHS P20 RR016475NIGMS NIH HHS P20 GM103418NIGMS NIH HHS P30 GM110761NIGMS NIH HHS R01 GM064781NIGMS NIH HHS R15 GM124671
6 · The paper itself

Abstract

Ribosomal stalk proteins recruit translation elongation GTPases to the factor-binding center of the ribosome. Initiation factor 5B (eIF5B in eukaryotes and aIF5B in archaea) is a universally conserved GTPase that promotes the joining of the large and small ribosomal subunits during translation initiation. Here we show that aIF5B binds to the C-terminal tail of the stalk protein. In the cocrystal structure, the interaction occurs between the hydrophobic amino acids of the stalk C-terminal tail and a small hydrophobic pocket on the surface of the GTP-binding domain (domain I) of aIF5B. A substitution mutation altering the hydrophobic pocket of yeast eIF5B resulted in a marked reduction in ribosome-dependent eIF5B GTPase activity

Indexed as

AeropyrumAmino Acid SubstitutionArchaeal ProteinsBasic-Leucine Zipper Transcription FactorsEukaryotic Initiation Factor-1Eukaryotic Initiation FactorsModels, MolecularMutationPeptide Chain Initiation, TranslationalPhenotypeProtein Interaction Domains and MotifsRibosomal ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsArchaeal ProteinsBasic-Leucine Zipper Transcription FactorsEukaryotic Initiation Factor-1eukaryotic initiation factor-5BEukaryotic Initiation FactorsGCN4 protein, S cerevisiaeRibosomal ProteinsSaccharomyces cerevisiae Proteinsgeneral control responseIF2 GTPaseribosomesribosome stalk complexstart codontranslation initiationtranslation initiation factor

Identifiers

PMID29844065
PMCPMC6066748
OpenAlexW2806263296

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.