Evidence map›Paper›PMID 29813070›Full record

ArticlePLoS biology2018

Zbtb7a is a transducer for the control of promoter accessibility by NF-kappa B and multiple other transcription factors.

José Miguel Ramos Pittol, Agata Oruba, Gerhard Mittler, Simona Saccani, Dominic van Essen

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 50 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

José Miguel Ramos PittolInstitute for Research on Cancer and Aging, Nice, Nice, France.
Agata OrubaMax Planck Institute for Immunobiology and Epigenetics, Freiburg, Germany.
Gerhard MittlerMax Planck Institute for Immunobiology and Epigenetics, Freiburg, Germany.
Simona SaccaniInstitute for Research on Cancer and Aging, Nice, Nice, France.
Dominic van EssenInstitute for Research on Cancer and Aging, Nice, Nice, France.ORCID 0000-0002-7225-1138
Institut de Recherche sur le Cancer et le Vieillissement de Nice · FRMax Planck Institute of Immunobiology and Epigenetics · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gene expression in eukaryotes is controlled by DNA sequences at promoter and enhancer regions, whose accessibility for binding by regulatory proteins dictates their specific patterns of activity. Here, we identify the protein Zbtb7a as a factor required for inducible changes in accessibility driven by transcription factors (TFs). We show that Zbtb7a binds to a significant fraction of genomic promoters and enhancers, encompassing many target genes of nuclear factor kappa B (NFκB) p65 and a variety of other TFs. While Zbtb7a binding is not alone sufficient to directly activate promoters, it is required to enable TF-dependent control of accessibility and normal gene expression. Using p65 as a model TF, we show that Zbtb7a associates with promoters independently of client TF binding. Moreover, the presence of prebound Zbtb7a can specify promoters that are amenable to TF-induced changes in accessibility. Therefore, Zbtb7a represents a widely used promoter factor that transduces signals from other TFs to enable control of accessibility and regulation of gene expression.

Indexed as

Promoter Regions, GeneticTranscriptional Activation3T3 CellsAnimalsBinding SitesDNA-Binding ProteinsEnhancer Elements, GeneticIsotope LabelingMiceMice, KnockoutTranscription Factor RelATranscription FactorsDNA-Binding ProteinsRela protein, mouseTranscription Factor RelATranscription FactorsZbtb7a protein, mouse

Identifiers

PMID29813070
PMCPMC5993293
OpenAlexW2806835158

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.