Evidence map›Paper›PMID 29809150›Full record

ArticleeLife2018

FBXL19 recruits CDK-Mediator to CpG islands of developmental genes priming them for activation during lineage commitment.

Emilia Dimitrova, Takashi Kondo, Angelika Feldmann, Manabu Nakayama, Yoko Koseki, Rebecca Konietzny, Benedikt M Kessler, Haruhiko Koseki, Robert J Klose

Open access · goldAbstract read
In one paragraph

Article in eLife, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 30 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Emilia DimitrovaDepartment of Biochemistry, University of Oxford, Oxford, United Kingdom.ORCID http://orcid.org/0000-0001-5669-1240
Takashi Kondo *Laboratory for Developmental Genetics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Angelika Feldmann *Department of Biochemistry, University of Oxford, Oxford, United Kingdom.
Manabu NakayamaDepartment of Technology Development, Kazusa DNA Research Institute, Kisarazu, Japan.
Yoko KosekiLaboratory for Developmental Genetics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Rebecca KonietznyNuffield Department of Medicine, TDI Mass Spectrometry Laboratory, Target Discovery Institute, University of Oxford, Oxford, United Kingdom.
Benedikt M KesslerNuffield Department of Medicine, TDI Mass Spectrometry Laboratory, Target Discovery Institute, University of Oxford, Oxford, United Kingdom.
Haruhiko KosekiLaboratory for Developmental Genetics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.ORCID http://orcid.org/0000-0001-8424-5854
Robert J KloseDepartment of Biochemistry, University of Oxford, Oxford, United Kingdom.ORCID http://orcid.org/0000-0002-8726-7888
University of Oxford · GBRIKEN Center for Integrative Medical Sciences · JPJapan Science and Technology Agency · JPKazusa DNA Research Institute · JP

Funding

European Research Council 681440Wellcome Trust 098024/Z/11/ZWellcome Trust 110286/Z/15/ZWellcome Trust 209400/Z/17/Z
6 · The paper itself

Abstract

CpG islands are gene regulatory elements associated with the majority of mammalian promoters, yet how they regulate gene expression remains poorly understood. Here, we identify FBXL19 as a CpG island-binding protein in mouse embryonic stem (ES) cells and show that it associates with the CDK-Mediator complex. We discover that FBXL19 recruits CDK-Mediator to CpG island-associated promoters of non-transcribed developmental genes to prime these genes for activation during cell lineage commitment. We further show that recognition of CpG islands by FBXL19 is essential for mouse development. Together this reveals a new CpG island-centric mechanism for CDK-Mediator recruitment to developmental gene promoters in ES cells and a requirement for CDK-Mediator in priming these developmental genes for activation during cell lineage commitment.

Indexed as

Cell LineageCpG IslandsGenes, DevelopmentalAnimalsCell DifferentiationCells, CulturedChromatinCyclin-Dependent Kinase 8DNA-Binding ProteinsDNA MethylationF-Box ProteinsMediator ComplexMiceMice, Inbred C57BLMice, KnockoutMouse Embryonic Stem CellsCdk8 protein, mouseChromatinCyclin-Dependent Kinase 8DNA-Binding ProteinsF-Box ProteinsFBXL19 protein, mouseMed13 protein, mouseMediator ComplexCDK-MediatorchromatinchromosomesCpG islandsdevelopmental biologygene expressionlineage commitmentmousestem cellstranscriptionZF-CxxC

Identifiers

PMID29809150
PMCPMC5997449
OpenAlexW2953012408

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.