Evidence map›Paper›PMID 29808415›Full record

ArticleCellular and molecular life sciences : CMLS2018

Immune stimuli shape the small non-coding transcriptome of extracellular vesicles released by dendritic cells.

Tom A P Driedonks, Susanne G van der Grein, Yavuz Ariyurek, Henk P J Buermans, Henrike Jekel, Franklin W N Chow, Marca H M Wauben, Amy H Buck, Peter A C 't Hoen, Esther N M Nolte-'t Hoen

Abstract read
In one paragraph

Article in Cellular and molecular life sciences : CMLS, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Review
  6. Biogenesis and functional implications of extracellular vesicles in cancer metastasis.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2025
    Review
  7. Review
  8. Review
  9. Article
  10. Extracellular vesicles in Alzheimer's disease.Arquivos de neuro-psiquiatria · 2024
    Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Review
  16. Relationships ofNeurology. Genetics · 2022
    Article
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Tom A P DriedonksDepartment of Biochemistry and Cell Biology, Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands.
Susanne G van der GreinDepartment of Biochemistry and Cell Biology, Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands.
Yavuz AriyurekDepartment of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Henk P J BuermansDepartment of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Henrike JekelDepartment of Biochemistry and Cell Biology, Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands.
Franklin W N ChowSchool of Biological Sciences, Centre for Immunity, Infection and Evolution, Institute of Immunology and Infection Research, University of Edinburgh, Edinburgh, UK.
Marca H M WaubenDepartment of Biochemistry and Cell Biology, Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands.
Amy H BuckSchool of Biological Sciences, Centre for Immunity, Infection and Evolution, Institute of Immunology and Infection Research, University of Edinburgh, Edinburgh, UK.
Peter A C 't HoenDepartment of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Esther N M Nolte-'t HoenDepartment of Biochemistry and Cell Biology, Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands. e.n.m.nolte@uu.nl.

Funding

European Cooperation in Science and Technology 191116-083388FP7 Ideas: European Research Council 337581Human Frontier Science Program RGY0069
6 · The paper itself

Abstract

The release and uptake of nano-sized extracellular vesicles (EV) is a highly conserved means of intercellular communication. The molecular composition of EV, and thereby their signaling function to target cells, is regulated by cellular activation and differentiation stimuli. EV are regarded as snapshots of cells and are, therefore, in the limelight as biomarkers for disease. Although research on EV-associated RNA has predominantly focused on microRNAs, the transcriptome of EV consists of multiple classes of small non-coding RNAs with potential gene-regulatory functions. It is not known whether environmental cues imposed on cells induce specific changes in a broad range of EV-associated RNA classes. Here, we investigated whether immune-activating or -suppressing stimuli imposed on primary dendritic cells affected the release of various small non-coding RNAs via EV. The small RNA transcriptomes of highly pure EV populations free from ribonucleoprotein particles were analyzed by RNA sequencing and RT-qPCR. Immune stimulus-specific changes were found in the miRNA, snoRNA, and Y-RNA content of EV from dendritic cells, whereas tRNA and snRNA levels were much less affected. Only part of the changes in EV-RNA content reflected changes in cellular RNA, which urges caution in interpreting EV as snapshots of cells. By comprehensive analysis of RNA obtained from highly purified EV, we demonstrate that multiple RNA classes contribute to genetic messages conveyed via EV. The identification of multiple RNA classes that display cell stimulation-dependent association with EV is the prelude to unraveling the function and biomarker potential of these EV-RNAs.

Indexed as

TranscriptomeAnimalsBone Marrow CellsCells, CulturedCholecalciferolDendritic CellsExtracellular VesiclesFluorescent DyesLipopolysaccharidesMiceMice, Inbred C57BLMicroRNAsMicroscopy, ElectronNanoparticlesRNA, Small NucleolarRNA, Small UntranslatedCholecalciferolFluorescent DyesLipopolysaccharidesMicroRNAsRNA, Small NucleolarRNA, Small UntranslatedRNA, TransferBiomarkerExtracellular RNAImmune activationImmune suppressionSmall RNA sequencing

Identifiers

PMID29808415
PMCPMC6154026

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.