Evidence map›Paper›PMID 29808313›Full record

ArticleProtoplasma2018

Function of the evolutionarily conserved plant methionine-S-sulfoxide reductase without the catalytic residue.

Dung Tien Le, Kim-Lien Nguyen, Ha Duc Chu, Nam Tuan Vu, Thu Thi Ly Pham, Lam-Son Phan Tran

Abstract read
PubMed Publisher
In one paragraph

Article in Protoplasma, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Dung Tien LeAgricultural Genetics Institute, Vietnam Academy of Agricultural Sciences, Pham Van Dong Street, Hanoi, Vietnam. research@letiendung.info.
Kim-Lien NguyenAgricultural Genetics Institute, Vietnam Academy of Agricultural Sciences, Pham Van Dong Street, Hanoi, Vietnam.
Ha Duc ChuAgricultural Genetics Institute, Vietnam Academy of Agricultural Sciences, Pham Van Dong Street, Hanoi, Vietnam.
Nam Tuan VuThe Metabolic Network Biology Laboratory, Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan.
Thu Thi Ly PhamAgricultural Genetics Institute, Vietnam Academy of Agricultural Sciences, Pham Van Dong Street, Hanoi, Vietnam.
Lam-Son Phan TranStress Adaptation Research Unit, RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi, Yokohama, 230-0045, Japan. son.tran@riken.jp.ORCID http://orcid.org/0000-0001-9883-9768
Agricultural Genetics Institute · VNMonsanto (United States) · USRIKEN Center for Sustainable Resource Science · JPUniversity of Tsukuba · JP

Funding

National Foundation for Science and Technology Development (NAFOSTED) 106-NN.02-2013.46
6 · The paper itself

Abstract

In plants, two types of methionine sulfoxide reductase (MSR) exist, namely methionine-S-sulfoxide reductase (MSRA) and methionine-R-sulfoxide reductase (MSRB). These enzymes catalyze the reduction of methionine sulfoxides (MetO) back to methionine (Met) by a catalytic cysteine (Cys) and one or two resolving Cys residues. Interestingly, a group of MSRA encoded by plant genomes does not have a catalytic residue. We asked that if this group of MSRA did not have any function (as fitness), why it was not lost during the evolutionary process. To challenge this question, we analyzed the gene family encoding MSRA in soybean (GmMSRAs). We found seven genes encoding GmMSRAs, which included three segmental duplicated pairs. Among them, a pair of duplicated genes, namely GmMSRA1 and GmMSRA6, was without a catalytic Cys residue. Pseudogenes were ruled out as their transcripts were detected in various tissues and their Ka/Ks ratio indicated a negative selection pressure. In vivo analysis in Δ3MSR yeast strain indicated that the GmMSRA6 did not have activity toward MetO, contrasting to GmMSRA3 which had catalytic Cys and had activity. When exposed to H

Indexed as

BiocatalysisEvolution, MolecularArabidopsisComputer SimulationConserved SequenceCysteineGene DuplicationGene Expression ProfilingGene Expression Regulation, PlantGenes, PlantGlycine maxMethionine Sulfoxide ReductasesMultigene FamilyPhylogenyPlants, Genetically ModifiedPromoter Regions, GeneticCysteinemethionine sulfoxide reductaseMethionine Sulfoxide ReductasesRNA, MessengerAbiotic stressMethionine oxidationMethionine-S-sulfoxide reductaseProtein repair

Identifiers

PMID29808313
OpenAlexW2807650893

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.