Evidence map›Paper›PMID 29807130›Full record

ReviewSeminars in cell & developmental biology2019

It's not magic - Hsp90 and its effects on genetic and epigenetic variation.

Rebecca A Zabinsky, Grace Alexandria Mason, Christine Queitsch, Daniel F Jarosz

Abstract readHistorical ArticleReview
In one paragraph

Review in Seminars in cell & developmental biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 108 citations in OpenAlex.

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  18. bioRxiv : the preprint server for biology · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Rebecca A ZabinskyDepartment of Chemical and Systems Biology, Stanford School of Medicine, Stanford, CA, United States.
Grace Alexandria MasonDepartment of Genome Sciences, University of Washington, Seattle, WA, United States.
Christine QueitschDepartment of Genome Sciences, University of Washington, Seattle, WA, United States. Electronic address: queitsch@u.washington.edu.
Daniel F JaroszDepartment of Chemical and Systems Biology, Stanford School of Medicine, Stanford, CA, United States; Department of Developmental Biology, Stanford University School of Medicine, Stanford, CA, United States. Electronic address: jarosz@stanford.edu.
Stanford Medicine · USUniversity of Washington · US

Funding

GENETIC APPROACHES TO AGING RESEARCHT32AG000057 · NIA · UNIVERSITY OF WASHINGTON · PI RABINOVITCH, PETER S · 1985 to 2019
$14.2M
Protein-based Molecular Memories in Gene Regulation, Disease, and DevelopmentDP2GM119140 · NIGMS · STANFORD UNIVERSITY · PI JAROSZ, DANIEL · 2015 to 2015
$2.4M
Does organismal robustness explain the missing heritability in complex diseases?DP2OD008371 · OD · UNIVERSITY OF WASHINGTON · PI QUEITSCH, CHRISTINE · 2011 to 2011
$2.3M
Ribosomal DNA copy number variation as a source of missing heritability in complex traitsR01GM122088 · NIGMS · UNIVERSITY OF WASHINGTON · PI QUEITSCH, CHRISTINE · 2017 to 2019
$1.4M
A yeast model of complex disease geneticsR01GM114166 · NIGMS · UNIVERSITY OF WASHINGTON · PI QUEITSCH, CHRISTINE · 2015 to 2018
$1.2M
NIA NIH HHS T32 AG000057NIGMS NIH HHS DP2 GM119140NIGMS NIH HHS R01 GM114166NIGMS NIH HHS R01 GM122088NIH HHS DP2 OD008371
6 · The paper itself

Abstract

Canalization, or phenotypic robustness in the face of environmental and genetic perturbation, is an emergent property of living systems. Although this phenomenon has long been recognized, its molecular underpinnings have remained enigmatic until recently. Here, we review the contributions of the molecular chaperone Hsp90, a protein that facilitates the folding of many key regulators of growth and development, to canalization of phenotype - and de-canalization in times of stress - drawing on studies in eukaryotes as diverse as baker's yeast, mouse ear cress, and blind Mexican cavefish. Hsp90 is a hub of hubs that interacts with many so-called 'client proteins,' which affect virtually every aspect of cell signaling and physiology. As Hsp90 facilitates client folding and stability, it can epistatically suppress or enable the expression of genetic variants in its clients and other proteins that acquire client status through mutation. Hsp90's vast interaction network explains the breadth of its phenotypic reach, including Hsp90-dependent de novo mutations and epigenetic effects on gene regulation. Intrinsic links between environmental stress and Hsp90 function thus endow living systems with phenotypic plasticity in fluctuating environments. As environmental perturbations alter Hsp90 function, they also alter Hsp90's interaction with its client proteins, thereby re-wiring networks that determine the genotype-to-phenotype map. Ensuing de-canalization of phenotype creates phenotypic diversity that is not simply stochastic, but often has an underlying genetic basis. Thus, extreme phenotypes can be selected, and assimilated so that they no longer require environmental stress to manifest. In addition to acting on standing genetic variation, Hsp90 perturbation has also been linked to increased frequency of de novo variation and several epigenetic phenomena, all with the potential to generate heritable phenotypic change. Here, we aim to clarify and discuss the multiple means by which Hsp90 can affect phenotype and possibly evolutionary change, and identify their underlying common feature: at its core, Hsp90 interacts epistatically through its chaperone function with many other genes and their gene products. Its influence on phenotypic diversification is thus not magic but rather a fundamental property of genetics.

Indexed as

Biological EvolutionEpistasis, GeneticGene Expression Regulation, DevelopmentalGenotypePhenotypeAdaptation, PhysiologicalAnimalsEpigenesis, GeneticGene-Environment InteractionGene Regulatory NetworksGenetic VariationHistory, 20th CenturyHistory, 21st CenturyHSP90 Heat-Shock ProteinsHumansSaccharomyces cerevisiaeHSP90 Heat-Shock ProteinsBufferingCanalizationCapacitorHsp90PotentiateRobustness

Identifiers

PMID29807130
PMCPMC6281791
OpenAlexW2805903905

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.