Evidence map›Paper›PMID 29806841›Full record

ArticleJournal of visualized experiments : JoVE2018

Clonal Analysis of Embryonic Hematopoietic Stem Cell Precursors Using Single Cell Index Sorting Combined with Endothelial Cell Niche Co-culture.

Brandon K Hadland, Barbara Varnum-Finney, Cynthia Nourigat-Mckay, David Flowers, Irwin D Bernstein

Abstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Brandon K HadlandClinical Research Division, Fred Hutchinson Cancer Research Center; Department of Pediatrics, Division of Pediatric Hematology/Oncology, University of Washington School of Medicine; bhadland@fredhutch.org.
Barbara Varnum-FinneyClinical Research Division, Fred Hutchinson Cancer Research Center.
Cynthia Nourigat-MckayClinical Research Division, Fred Hutchinson Cancer Research Center.
David FlowersClinical Research Division, Fred Hutchinson Cancer Research Center.
Irwin D BernsteinClinical Research Division, Fred Hutchinson Cancer Research Center; Department of Pediatrics, Division of Pediatric Hematology/Oncology, University of Washington School of Medicine.

Funding

Progenitor Cell Biology Consortium Administrative Coordinating CenterU01HL099997 · NHLBI · UNIVERSITY OF MARYLAND BALTIMORE · PI TERRIN, MICHAEL L · 2009 to 2015
$29.9M
Expansion of Cardiac and Hematopoietic Pregenitors by Wnt and NotchU01HL100395 · NHLBI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BERNSTEIN, IRWIN D, MOON, RANDALL TODD · 2009 to 2015
$8.4M
Niche signals in HSC genesisRC2DK114777 · NIDDK · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BERNSTEIN, IRWIN D, RAFII, SHAHIN · 2017 to 2021
$3.3M
Functional and transcriptional analysis of embryonic hematopoietic stem cell development at the single cell levelK08HL140143 · NHLBI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI HADLAND, BRANDON K · 2018 to 2021
$584k
NHLBI NIH HHS K08 HL140143NHLBI NIH HHS U01 HL099997NHLBI NIH HHS U01 HL100395NIDDK NIH HHS RC2 DK114777
6 · The paper itself

Abstract

The ability to study hematopoietic stem cell (HSC) genesis during embryonic development has been limited by the rarity of HSC precursors in the early embryo and the lack of assays that functionally identify the long-term multilineage engraftment potential of individual putative HSC precursors. Here, we describe methodology that enables the isolation and characterization of functionally validated HSC precursors at the single cell level. First, we utilize index sorting to catalog the precise phenotypic parameter of each individually sorted cell, using a combination of phenotypic markers to enrich for HSC precursors with additional markers for experimental analysis. Second, each index-sorted cell is co-cultured with vascular niche stroma from the aorta-gonad-mesonephros (AGM) region, which supports the maturation of non-engrafting HSC precursors to functional HSC with multilineage, long-term engraftment potential in transplantation assays. This methodology enables correlation of phenotypic properties of clonal hemogenic precursors with their functional engraftment potential or other properties such as transcriptional profile, providing a means for the detailed analysis of HSC precursor development at the single cell level.

Indexed as

Cells, CulturedCell SeparationCoculture TechniquesEndothelial CellsFemaleHematopoietic Stem CellsHumansPregnancy

Identifiers

PMID29806841
PMCPMC6101165

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.