Evidence map›Paper›PMID 29805915›Full record

ArticleCurrent genetic medicine reports2017

Genomics of human pulmonary tuberculosis: from genes to pathways.

Catherine M Stein, Lindsay Sausville, Christian Wejse, Rafal S Sobota, Nicola M Zetola, Philip C Hill, W Henry Boom, William K Scott, Giorgio Sirugo, Scott M Williams

Open access · bronzeAbstract read
In one paragraph

Article in Current genetic medicine reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 46 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Variants in theJournal of clinical tuberculosis and other mycobacterial diseases · 2024
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Interaction betweenPathogens (Basel, Switzerland) · 2021
    Article
  12. Article
  13. Review
  14. P2RX7 at the Host-Pathogen Interface of Infectious Diseases.Microbiology and molecular biology reviews : MMBR · 2021
    Review
  15. Review
  16. CLEC4E (Mincle) genetic variation associates with pulmonary tuberculosis in Guinea-Bissau (West Africa).Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2020
    Article
  17. Genetics and evolution of tuberculosis pathogenesis: New perspectives and approaches.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2020
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 4 countries.

Catherine M SteinDepartment of Population and Quantitative Health Sciences, Cleveland, OH.
Lindsay SausvilleDepartment of Population and Quantitative Health Sciences, Cleveland, OH.
Christian WejseDept of Infectious Diseases/Center for Global Health, Aarhus University, Aarhus, Denmark.
Rafal S SobotaThe Ken and Ruth Davee Department of Neurology, Northwestern University, Chicago, IL.
Nicola M ZetolaDivision of Infectious Diseases, University of Pennsylvania, Philadelphia, PA 19104, USA.
Philip C HillCentre for International Health, University of Otago, Dunedin, New Zealand.
W Henry BoomTuberculosis Research Unit, Case Western Reserve University, Cleveland, OH.
William K ScottDepartment of Human Genetics and Genomics, University of Miami School of Medicine, Miami, FL.
Giorgio SirugoInstitute for Translational Medicine and Therapeutics, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA.
Scott M WilliamsDepartment of Population and Quantitative Health Sciences, Cleveland, OH.
Case Western Reserve University · USUniversity of Pennsylvania · USAarhus University · DKNorthwestern University · USUniversity of Miami · USUniversity of Otago · NZ

Funding

Resistance to MTB infection in HIV infected individuals in Uganda and S. AfricaR01AI124348 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI BOOM, W. HENRY, HAWN, THOMAS R · 2016 to 2020
$11.3M
Natural Resistance to Mycobacterium Tuberculosis InfectionU01AI115642 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI BOOM, W. HENRY, MAYANJA-KIZZA, HARRIET · 2015 to 2019
$3.5M
Training Program on Genetic Variation and Human PhenotypesT32GM080178 · NIGMS · VANDERBILT UNIVERSITY · PI COX, NANCY J, SAMUELS, DAVID C · 2007 to 2021
$3.1M
NIAID NIH HHS R01 AI124348NIAID NIH HHS U01 AI115642NIGMS NIH HHS T32 GM080178
6 · The paper itself

Abstract

purpose of reviewTuberculosis (TB), caused by RECENT

findingsDespite the difficulties in identifying consistent genetic associations, genetic studies of TB and MTB infection have revealed a few well-documented loci. These well validated genes are presented in this review, but there remains a large gap in how these genes translate into better understanding of TB. To address this, we present a pathway based extension of standard association analyses, seeding the results with the best validated genes from candidate gene and GWAS studies. SUMMARY: Several pathways were significantly enriched using pathway analyses that may help to explain population patterns of TB risk. In conclusion, we advocate for novel approaches to the study of host genetic analysis of TB that extend traditional association approaches.

Indexed as

Tuberculosis geneticsTuberculosis pathways and diseaseTuberculosis resistance

Identifiers

PMID29805915
PMCPMC5965286
OpenAlexW2762343515

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.