Evidence map›Paper›PMID 29805176›Full record

ArticleThe ISME journal2018

Beyond the tip of the iceberg; a new view of the diversity of sulfite- and sulfate-reducing microorganisms.

Adrien Vigneron, Perrine Cruaud, Eric Alsop, Julia R de Rezende, Ian M Head, Nicolas Tsesmetzis

Abstract read
In one paragraph

Article in The ISME journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

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  9. Generation of zero-valent sulfur from dissimilatory sulfate reduction in sulfate-reducing microorganisms.Proceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Adrien VigneronSchool of Civil Engineering and Geosciences, Newcastle University, Newcastle Upon Tyne, UK.
Perrine CruaudINRA, UMR1062 CBGP, F-34988, Montferrier-sur-Lez, France.
Eric AlsopShell International Exploration and Production Inc., Houston, TX, USA.
Julia R de RezendeLyell Centre, Heriot Watt University, Edinburgh, UK.ORCID http://orcid.org/0000-0001-7750-4344
Ian M HeadSchool of Civil Engineering and Geosciences, Newcastle University, Newcastle Upon Tyne, UK. ian.head@newcastle.ac.uk.
Nicolas TsesmetzisSchool of Civil Engineering and Geosciences, Newcastle University, Newcastle Upon Tyne, UK.ORCID http://orcid.org/0000-0001-5246-0568

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sulfite-reducing and sulfate-reducing microorganisms (SRM) play important roles in anoxic environments, linking the sulfur and carbon cycles. With climate warming, the distribution of anoxic habitats conductive to dissimilatory SRM is expanding. Consequently, we hypothesize that novel SRM are likely to emerge from the rare biosphere triggered by environmental changes. Using the dsrB gene as a  molecular marker of sulfite-reducers and sulfate-reducers, we analyzed the diversity, community composition, and abundance of SRM in 200 samples representing 14 different ecosystems, including marine and freshwater environments, oil reservoirs, and engineered infrastructure. Up to 167,397 species-level OTUs affiliated with 47 different families were identified. Up to 96% of these can be considered as "rare biosphere SRM". One  third of the dsrB genes identified belonged to uncharacterized lineages. The dsrB sequences exhibited a  strong pattern of selection in different ecosystems. These results expand our knowledge of the biodiversity and distribution of SRM, with implications for carbon and sulfur cycling in anoxic ecosystems.

Indexed as

BiodiversityBacteriaEcosystemFresh WaterOxidation-ReductionPhylogenySeawaterSulfatesSulfitesSulfatesSulfites

Identifiers

PMID29805176
PMCPMC6052056

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.