Evidence map›Paper›PMID 29805042›Full record

ArticleAmerican journal of human genetics2018

Mutations in the Epithelial Cadherin-p120-Catenin Complex Cause Mendelian Non-Syndromic Cleft Lip with or without Cleft Palate.

Liza L Cox, Timothy C Cox, Lina M Moreno Uribe, Ying Zhu, Chika T Richter, Nichole Nidey, Jennifer M Standley, Mei Deng, Elizabeth Blue, Jessica X Chong and 23 more

Open access · greenAbstract read
In one paragraph

Article in American journal of human genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed, 1 pooled it
9.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed, 1 synthesis or guideline pooled it, 129 citations in OpenAlex.

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25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors at 14 institutions in 3 countries.

Liza L CoxDivision of Craniofacial Medicine, Department of Pediatrics, University of Washington, Seattle, WA 98195, USA; Center for Developmental Biology & Regenerative Medicine, Seattle Children's Research Institute, Seattle, WA 98101, USA; Division of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.
Timothy C CoxDivision of Craniofacial Medicine, Department of Pediatrics, University of Washington, Seattle, WA 98195, USA; Center for Developmental Biology & Regenerative Medicine, Seattle Children's Research Institute, Seattle, WA 98101, USA; Department of Anatomy & Developmental Biology, Monash University, Clayton, VIC 3800, Australia. Electronic address: tccox@uw.edu.
Lina M Moreno UribeDepartment of Orthodontics & the Iowa Institute for Oral Health Research, University of Iowa, Iowa City, IA 52242, USA.
Ying ZhuNew South Wales Health Pathology, Prince of Wales Hospital, Randwick, NSW 2031, Australia; Genetics of Learning Disability Service, Waratah, NSW 2298, Australia.
Chika T RichterDepartment of Orthodontics & the Iowa Institute for Oral Health Research, University of Iowa, Iowa City, IA 52242, USA.
Nichole NideyDepartment of Pediatrics, University of Iowa, Iowa City, IA 52242, USA.
Jennifer M StandleyDepartment of Pediatrics, University of Iowa, Iowa City, IA 52242, USA.
Mei DengBirth Defects Research Laboratory, University of Washington, Seattle, WA 98195, USA.
Elizabeth BlueDivision of Medical Genetics, Department of Medicine, University of Washington, Seattle, WA 98195, USA.
Jessica X ChongDivision of Genetic Medicine, Department of Pediatrics, University of Washington, Seattle, WA 98195, USA.
Yueqin YangDepartment of Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Russ P CarstensDepartment of Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; Department of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Deepti AnandDepartment of Biological Sciences, University of Delaware, Newark, DE 19716, USA.
Salil A LachkeDepartment of Biological Sciences, University of Delaware, Newark, DE 19716, USA.
Joshua D SmithDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Michael O DorschnerNorthwest Clinical Genomics Laboratory, Center for Precision Diagnostics, University of Washington, Seattle, WA 98195, USA; Department of Pathology, University of Washington, Seattle, WA 98195, USA.
Bruce BedellDepartment of Pediatrics, University of Iowa, Iowa City, IA 52242, USA.
Edwin KirkNew South Wales Health Pathology, Prince of Wales Hospital, Randwick, NSW 2031, Australia; Centre for Clinical Genetics, Sydney Children's Hospital, Randwick, Sydney, NSW 2031, Australia.
Anne V HingDivision of Craniofacial Medicine, Department of Pediatrics, University of Washington, Seattle, WA 98195, USA; Seattle Craniofacial Center, Seattle Children's Hospital, Seattle, WA 98105, USA.
Hanka VenselaarCentre for Molecular and Biomolecular Informatics, Radboud University Nijmegen Medical Centre, Nijmegen 6500 HB, the Netherlands.
Luz C Valencia-RamirezFundación Clínica Noel, Medellin 050021, Colombia.
Michael J BamshadDivision of Genetic Medicine, Department of Pediatrics, University of Washington, Seattle, WA 98195, USA; Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Ian A GlassBirth Defects Research Laboratory, University of Washington, Seattle, WA 98195, USA; Division of Genetic Medicine, Department of Pediatrics, University of Washington, Seattle, WA 98195, USA.
Jonathan A CooperDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.
Eric HaanSouth Australian Clinical Genetics Service, SA Pathology (at Women's and Children's Hospital), North Adelaide, SA 5006, Australia; School of Medicine, University of Adelaide, Adelaide, SA 5000, Australia.
Deborah A NickersonDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Hans van BokhovenDepartment of Human Genetics, Radboud University Nijmegen Medical Centre, Nijmegen 6500 HB, the Netherlands; Department of Cognitive Neurosciences, Donders Institute for Brain, Cognition and Behaviour, Radboud University Medical Center, Nijmegen 6500 HB, the Netherlands.
Huiqing ZhouDepartment of Human Genetics, Radboud University Nijmegen Medical Centre, Nijmegen 6500 HB, the Netherlands; Department of Molecular Developmental Biology, Radboud Institute for Molecular Life Sciences, Radboud University, Nijmegen 6525 GA, the Netherlands.
Katy N KrahnUVA Center for Advanced Medical Analytics, School of Medicine, University of Virginia, Charlottesville, VA 22908, USA.
Michael F BuckleyNew South Wales Health Pathology, Prince of Wales Hospital, Randwick, NSW 2031, Australia.
Jeffrey C MurrayDepartment of Pediatrics, University of Iowa, Iowa City, IA 52242, USA.
Andrew C LidralLidral Orthodontics, Rockford, MI 49341, USA.
Tony RoscioliCentre for Clinical Genetics, Sydney Children's Hospital, Randwick, Sydney, NSW 2031, Australia; Prince of Wales Clinical School, University of New South Wales, Randwick, NSW 2031, Australia; Neuroscience Research Australia, Sydney, NSW 2031, Australia. Electronic address: tony.roscioli@health.nsw.gov.au.
University of Washington · USUniversity of Iowa · USPrince of Wales Hospital · AURadboud University Nijmegen · NLUniversity of Delaware · USUniversity of Pennsylvania · USFred Hutch Cancer Center · USHunter Genetics · AUNeuroscience Research Australia · AURadboud University Medical Center · NLSeattle Children's Hospital · USSouth Australia Pathology · AUUniversity of Virginia · USUniversity of Washington Medical Center · US

Funding

LABORATORY OF DEVELOPMENTAL BIOLOGYR24HD000836 · NICHD · UNIVERSITY OF WASHINGTON · PI Ian Amos Glass · 1995 to 2026
$16.9M
UW Center for Mendelian GenomicsUM1HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, LEAL, SUZANNE M · 2016 to 2020
$15.3M
Molecular Genetic Epidemiology of Cleft Lip and PalateR37DE008559 · NIDCR · UNIVERSITY OF IOWA · PI MURRAY, JEFFREY C · 2004 to 2013
$6.8M
Cleft Lip Genetics: A Multi Center International ConsortiumR01DE014667 · NIDCR · UNIVERSITY OF IOWA · PI LIDRAL, ANDREW C · 2001 to 2009
$4.2M
A web-based craniofacial disease gene discovery toolR03DE024776 · NIDCR · UNIVERSITY OF DELAWARE · PI LACHKE, SALIL · 2015 to 2016
$475k
NHGRI NIH HHS UM1 HG006493NICHD NIH HHS R24 HD000836NIDCR NIH HHS R01 DE014667NIDCR NIH HHS R03 DE024776NIDCR NIH HHS R37 DE008559
6 · The paper itself

Abstract

Non-syndromic cleft lip with or without cleft palate (NS-CL/P) is one of the most common human birth defects and is generally considered a complex trait. Despite numerous loci identified by genome-wide association studies, the effect sizes of common variants are relatively small, with much of the presumed genetic contribution remaining elusive. We report exome-sequencing results in 209 people from 72 multi-affected families with pedigree structures consistent with autosomal-dominant inheritance and variable penetrance. Herein, pathogenic variants are described in four genes encoding components of the p120-catenin complex (CTNND1, PLEKHA7, PLEKHA5) and an epithelial splicing regulator (ESRP2), in addition to the known CL/P-associated gene, CDH1, which encodes E-cadherin. The findings were also validated in a second cohort of 497 people with NS-CL/P, comprising small families and singletons with pathogenic variants in these genes identified in 14% of multi-affected families and 2% of the replication cohort of smaller families. Enriched expression of each gene/protein in human and mouse embryonic oro-palatal epithelia, demonstration of functional impact of CTNND1 and ESRP2 variants, and recapitulation of the CL/P spectrum in Ctnnd1 knockout mice support a causative role in CL/P pathogenesis. These data show that primary defects in regulators of epithelial cell adhesion are the most significant contributors to NS-CL/P identified to date and that inherited and de novo single gene variants explain a substantial proportion of NS-CL/P.

Indexed as

Genetic Predisposition to DiseaseAllelesAmino Acid SequenceAnimalsBiotinylationCadherinsCateninsCleft LipCleft PalateDelta CateninEpitheliumExome SequencingFemaleGene DeletionHumansInfantCadherinsCateninsDelta Cateninadherens junctioncadherincatenincell adhesioncleft lipcleft lip/palatecleft palateepitheliaexome sequencingknockout

Identifiers

PMID29805042
PMCPMC5992119
OpenAlexW2804950231

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.