Evidence map›Paper›PMID 29803102›Full record

ArticleBiosensors & bioelectronics2018

A direct isothermal amplification system adapted for rapid SNP genotyping of multifarious sample types.

Xiaonan Liu, Chao Zhang, Mengye Zhao, Kewu Liu, Hang Li, Ningning Li, Linlin Gao, Xuemin Yang, Ting Ma, Juanli Zhu and 3 more

Abstract read
In one paragraph

Article in Biosensors & bioelectronics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. A loop-mediated isothermal amplification (LAMP) assay to identify isotype 1 β-tubulin locus SNPs in synthetic double-strandedJournal of parasitic diseases : official organ of the Indian Society for Parasitology · 2022
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Xiaonan LiuCollege of Life Sciences, Northwest University, Xi'an 710069, China.
Chao ZhangCollege of Life Sciences, Northwest University, Xi'an 710069, China.
Mengye ZhaoCollege of Life Sciences, Northwest University, Xi'an 710069, China.
Kewu LiuCollege of Life Sciences, Northwest University, Xi'an 710069, China.
Hang LiCollege of Life Sciences, Northwest University, Xi'an 710069, China.
Ningning LiThe Seventh Affiliated Hospital of Sun Yat-sen University, Shenzhen 518107, China.
Linlin GaoCollege of Life Sciences, Northwest University, Xi'an 710069, China.
Xuemin YangCollege of Life Sciences, Northwest University, Xi'an 710069, China.
Ting MaShaanxi Provincial People's Hospital, Xi'an 710068, China.
Juanli ZhuShaanxi Provincial Engineering Research Center for Nano-Biomedical Detection, Xi'an 710077, China.
Wenli HuiCollege of Life Sciences, Northwest University, Xi'an 710069, China; National Engineering Research Center for Miniaturized Detection System, Xi'an 710069, China.
Kai HuaCollege of Life Sciences, Northwest University, Xi'an 710069, China; National Engineering Research Center for Miniaturized Detection System, Xi'an 710069, China. Electronic address: kaihua@nwu.edu.cn.
Yali CuiCollege of Life Sciences, Northwest University, Xi'an 710069, China; Shaanxi Provincial Engineering Research Center for Nano-Biomedical Detection, Xi'an 710077, China; National Engineering Research Center for Miniaturized Detection System, Xi'an 710069, China. Electronic address: yalicui@nwu.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genotyping of single nucleotide polymorphisms (SNPs) in point-of-care (POC) settings could be further improved through simplifying the treatment of samples. In this study, we devised an accurate, rapid and easy-to-use SNP detection system based on direct loop-mediated isothermal amplification (LAMP) without DNA extraction, known as Direct-LAMP. Samples from various sources (including whole blood, dried blood spot, buccal swab and saliva), treated with NaOH, can be used directly in amplification. The turnaround time was about 30 min from sample collection to provision of results. The accuracy was evaluated by assessing the polymorphisms of methylenetetrahydrofolate reductase (MTHFR) C677T and aldehyde dehydrogenase-2 (ALDH2) Glu504Lys, which are better known for their critical role in folate and ethanol metabolism, respectively. Completely consistent genotyping results reveal that Direct-LAMP is generally concordant with sequencing. This system can serve as a very promising platform in the fields of disease predisposition, drug metabolism and personalized medicine.

Indexed as

Biosensing TechniquesGenotyping TechniquesAldehyde Dehydrogenase, MitochondrialGenotypeHumansMethylenetetrahydrofolate Reductase (NADPH2)Point-of-Care SystemsPolymorphism, Single NucleotideAldehyde Dehydrogenase, MitochondrialALDH2 protein, humanMethylenetetrahydrofolate Reductase (NADPH2)MTHFR protein, humanALDH2Isothermal amplificationMTHFRMultifarious sample typesSingle nucleotide polymorphism

Identifiers

PMID29803102
PMCPMC7126597

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.