Evidence map›Paper›PMID 29801436›Full record

ArticleBMC genomics2018

Modeling trophic dependencies and exchanges among insects' bacterial symbionts in a host-simulated environment.

Itai Opatovsky, Diego Santos-Garcia, Zhepu Ruan, Tamar Lahav, Shany Ofaim, Laurence Mouton, Valérie Barbe, Jiandong Jiang, Einat Zchori-Fein, Shiri Freilich

Abstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

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  3. A complete DNA repair system assembled by two endosymbionts restores heat tolerance of the insect host.Proceedings of the National Academy of Sciences of the United States of America · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Itai OpatovskyNewe Ya'ar Research Center, The Agricultural Research Organization, Ramat Yishay, Israel.
Diego Santos-GarciaDepartment of Entomology, Hebrew University of Jerusalem, Rehovot, Israel.
Zhepu RuanNewe Ya'ar Research Center, The Agricultural Research Organization, Ramat Yishay, Israel.
Tamar LahavNewe Ya'ar Research Center, The Agricultural Research Organization, Ramat Yishay, Israel.
Shany OfaimNewe Ya'ar Research Center, The Agricultural Research Organization, Ramat Yishay, Israel.
Laurence MoutonCNRS, Laboratoire de Biométrie et Biologie Evolutive UMR CNRS 5558, Université de Lyon, Université Claude Bernard, F-69622, Villeurbanne, France.
Valérie BarbeInstitut de biologie François-Jacob, GenoscopeCEA, Genoscope, Evry, France.
Jiandong JiangDepartment of Microbiology, College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China.
Einat Zchori-FeinNewe Ya'ar Research Center, The Agricultural Research Organization, Ramat Yishay, Israel.
Shiri FreilichNewe Ya'ar Research Center, The Agricultural Research Organization, Ramat Yishay, Israel. shiri@volcani.agri.gov.il.

Funding

Israel Science Foundation 1481/13Israel Science Foundation 484/17
6 · The paper itself

Abstract

backgroundIndividual organisms are linked to their communities and ecosystems via metabolic activities. Metabolic exchanges and co-dependencies have long been suggested to have a pivotal role in determining community structure. In phloem-feeding insects such metabolic interactions with bacteria enable complementation of their deprived nutrition. The phloem-feeding whitefly Bemisia tabaci (Hemiptera: Aleyrodidae) harbors an obligatory symbiotic bacterium, as well as varying combinations of facultative symbionts. This well-defined bacterial community in B. tabaci serves here as a case study for a comprehensive and systematic survey of metabolic interactions within the bacterial community and their associations with documented occurrences of bacterial combinations. We first reconstructed the metabolic networks of five common B. tabaci symbionts genera (Portiera, Rickettsia, Hamiltonella, Cardinium and Wolbachia), and then used network analysis approaches to predict: (1) species-specific metabolic capacities in a simulated bacteriocyte-like environment; (2) metabolic capacities of the corresponding species' combinations, and (3) dependencies of each species on different media components.

resultsThe predictions for metabolic capacities of the symbionts in the host environment were in general agreement with previously reported genome analyses, each focused on the single-species level. The analysis suggests several previously un-reported routes for complementary interactions and estimated the dependency of each symbiont in specific host metabolites. No clear association was detected between metabolic co-dependencies and co-occurrence patterns.

conclusionsThe analysis generated predictions for testable hypotheses of metabolic exchanges and co-dependencies in bacterial communities and by crossing them with co-occurrence profiles, contextualized interaction patterns into a wider ecological perspective.

Indexed as

EnvironmentModels, BiologicalSymbiosisAnimalsBacteriaGenome, BacterialHemipteraMetabolic Networks and PathwaysBemisia tabaciMetabolic interactionsNetwork analysisSymbionts

Identifiers

PMID29801436
PMCPMC5970531

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.