Evidence map›Paper›PMID 29801431›Full record

ArticleBMC genomics2018

Identification of recombination events in outbred species with next-generation sequencing data.

Shentong Tao, Jiyan Wu, Dan Yao, Yuhua Chen, Wenguo Yang, Chunfa Tong

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Shentong TaoCo-Innovation Center for Sustainable Forestry in South China, College of Forestry, Nanjing Forestry University, No.159, Longpan Road, Xuanwu Qu, Nanjing, 210037, China.
Jiyan WuCo-Innovation Center for Sustainable Forestry in South China, College of Forestry, Nanjing Forestry University, No.159, Longpan Road, Xuanwu Qu, Nanjing, 210037, China.
Dan YaoCo-Innovation Center for Sustainable Forestry in South China, College of Forestry, Nanjing Forestry University, No.159, Longpan Road, Xuanwu Qu, Nanjing, 210037, China.
Yuhua ChenCo-Innovation Center for Sustainable Forestry in South China, College of Forestry, Nanjing Forestry University, No.159, Longpan Road, Xuanwu Qu, Nanjing, 210037, China.
Wenguo YangCo-Innovation Center for Sustainable Forestry in South China, College of Forestry, Nanjing Forestry University, No.159, Longpan Road, Xuanwu Qu, Nanjing, 210037, China.
Chunfa TongCo-Innovation Center for Sustainable Forestry in South China, College of Forestry, Nanjing Forestry University, No.159, Longpan Road, Xuanwu Qu, Nanjing, 210037, China. tongchf@njfu.edu.cn.ORCID http://orcid.org/0000-0001-9795-211X
Nanjing Forestry University · CN

Funding

National Natural Science Foundation of China No. 31270706
6 · The paper itself

Abstract

backgroundMeiotic recombination events include crossovers and non-crossovers or gene conversions. Although the rate of crossovers is often used for genetic mapping, the gene conversion events are not well studied especially in outbred species, which could produce distorted markers and thus affect the precision of genetic maps.

resultsWe proposed a strategy for identifying gene conversion events in Populus with the next-generation sequencing (NGS) data from the two parents and their progeny in an F

conclusionsThe novel strategy and the new developed Perl package permit to identify gene conversion events with the next-generation sequencing technology in a hybrid population of outbred species. The new method revealed that in a genetic mapping population some distorted genetic markers are possibly due to the gene conversion events.

Indexed as

High-Throughput Nucleotide SequencingHybridization, GeneticRecombination, GeneticChromosome MappingGenetic MarkersHaplotypesMeiosisPolymorphism, Single NucleotidePopulusGenetic MarkersCrossoverGene conversionHaplotype blockNext-generation sequencingPopulus

Identifiers

PMID29801431
PMCPMC5970487
OpenAlexW2805259244

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.