ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2018
Draft genome of a high value tropical timber tree, Teak (Tectona grandis L. f): insights into SSR diversity, phylogeny and conservation.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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Who cites it
25 citing papers in PubMed.
- Article
- Next-generation SNPs from lignin biosynthesis gene and transcription factors reveal a hidden teak (Frontiers in genetics · 2026Article
- Transcriptome sequencing of medical herb Salvia Rosmarinus (Rosemary) revealed the phenylpropanoid biosynthesis pathway genes and their phylogenetic relationships.Molecular biology reports · 2024Article
- Genome-wide analysis of cellulose synthase gene superfamily in3 Biotech · 2024Article
- Analysis of the plant hormone expression profile during somatic embryogenesis induction in teak (Frontiers in plant science · 2024Article
- Genomic and Transcriptional Profiling Analysis and Insights into Rhodomyrtone Yield inPlants (Basel, Switzerland) · 2023Article
- Reassessing the genetic variability of Tectona grandis through high-throughput genotyping: Insights on its narrow genetic base.PloS one · 2023Article
- Chromosome-scale genome of Indian rosewood (Frontiers in plant science · 2023Article
- Article
- Genetic Diversity ofFrontiers in plant science · 2022Article
- Amplification, sequencing and characterization of pectin methyl esterase inhibitor 51 gene inSaudi journal of biological sciences · 2021Article
- De novo transcriptome analysis of white teak (Gmelina arborea Roxb) wood reveals critical genes involved in xylem development and secondary metabolism.BMC genomics · 2021Article
- Chloroplast genome analysis of Angiosperms and phylogenetic relationships among Lamiaceae members with particular reference to teak (Journal of biosciences · 2021Article
- Transcriptome Characterization and Identification of Molecular Markers (SNP, SSR, and Indels) in the Medicinal PlantBioMed research international · 2021Article
- Oxford Nanopore sequencing: new opportunities for plant genomics?Journal of experimental botany · 2020Article
- High-quality chromosome-scale assembly of the walnut (Juglans regia L.) reference genome.GigaScience · 2020Article
- Pharmaceutical resource discovery from traditional medicinal plants: Pharmacophylogeny and pharmacophylogenomics.Chinese herbal medicines · 2020Review
- Cross-amplification of microsatellite markers across agarwood-producing species of the Aquilarieae tribe (Thymelaeaceae).3 Biotech · 2020Article
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10 authors.
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Abstract
Teak (Tectona grandis L. f.) is one of the precious bench mark tropical hardwood having qualities of durability, strength and visual pleasantries. Natural teak populations harbour a variety of characteristics that determine their economic, ecological and environmental importance. Sequencing of whole nuclear genome of teak provides a platform for functional analyses and development of genomic tools in applied tree improvement. A draft genome of 317 Mb was assembled at 151× coverage and annotated 36, 172 protein-coding genes. Approximately about 11.18% of the genome was repetitive. Microsatellites or simple sequence repeats (SSRs) are undoubtedly the most informative markers in genotyping, genetics and applied breeding applications. We generated 182,712 SSRs at the whole genome level, of which, 170,574 perfect SSRs were found; 16,252 perfect SSRs showed in silico polymorphisms across six genotypes suggesting their promising use in genetic conservation and tree improvement programmes. Genomic SSR markers developed in this study have high potential in advancing conservation and management of teak genetic resources. Phylogenetic studies confirmed the taxonomic position of the genus Tectona within the family Lamiaceae. Interestingly, estimation of divergence time inferred that the Miocene origin of the Tectona genus to be around 21.4508 million years ago.
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