Evidence map›Paper›PMID 29797432›Full record

ArticleMicrobiologyOpen2019

Comparative genomic analysis of Myroides odoratimimus isolates.

Shaohua Hu, Lin Cao, Yiyin Wu, Yajun Zhou, Tao Jiang, Liqiang Wang, Qiujing Wang, Desong Ming, Shicheng Chen, Mingxi Wang

Abstract readComparative Study
In one paragraph

Article in MicrobiologyOpen, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. A New Emerging Threat in Critical Care:Indian journal of critical care medicine : peer-reviewed, official publication of Indian Society of Critical Care Medicine · 2025
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  8. Molecular Epidemiology ofInfection and drug resistance · 2020
    Article
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  12. Antimicrobial resistance and infection control · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Shaohua HuState Key Laboratory for Diagnosis and Treatment of Infectious Diseases, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, The First Affiliated Hospital of Medical College, Zhejiang University, Hangzhou, Zhejiang, China.
Lin CaoSchool of Medicine and School of Biomedical Sciences, Huaqiao University, Xiamen, Fujian, China.
Yiyin WuCollege of Computer Science and Technology, Huaqiao University, Xiamen, Fujian, China.
Yajun ZhouSchool of Medicine and School of Biomedical Sciences, Huaqiao University, Xiamen, Fujian, China.
Tao JiangSchool of Medicine and School of Biomedical Sciences, Huaqiao University, Xiamen, Fujian, China.
Liqiang WangSchool of Medicine and School of Biomedical Sciences, Huaqiao University, Xiamen, Fujian, China.
Qiujing WangDepartment of Neurosurgery, Shenzhen Hospital, Southern Medical University, Shenzhen, Guangdong, China.
Desong MingDepartment of Clinical Laboratory, Quanzhou First Hospital Affiliated to Fujian Medical University, Fujian, China.
Shicheng ChenDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, USA.
Mingxi WangSchool of Medicine and School of Biomedical Sciences, Huaqiao University, Xiamen, Fujian, China.ORCID 0000-0002-8093-0384

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Myroides odoratimimus is an important nosocomial pathogen. Management of M. odoratimimus infection is difficult owing to the multidrug resistance and the unknown pathogenesis mechanisms. Based on our previous genomic sequencing data of M. odoratimimus PR63039 (isolated from a patient with the urinary tract infection), in this study, we further performed comparative genomic analysis for 10 selected Myroides strains. Our results showed that these Myroides genome contexts were very similar and phylogenetically related. Various prophages were identified in the four clinical isolate genomes, which possibly contributed to the genome evolution among the Myroides strains. CRISPR elements were only detected in the two clinical (PR63039 and CCUG10230) isolates and two environmental (CCUG12700 and H1bi) strains. With more stringent cutoff parameters in CARD analysis, the four clinical M. odoratimimus contained roughly equal antibiotic resistance genes, indicating their similar antibiotic resistance profiles. The three clinical (CCUG10230, CCUG12901, CIP101113) and three environmental (CCUG12700, L41, H1bi) M. odoratimimus strains were speculated to carry the indistinguishable virulent factors (VFs), which may involve in the similar pathogenesis mechanism. Moreover, some VFs might confer to the high capacity of dissemination, attacking tissue cells and induction of autoimmune complications. Our results facilitate the research of antibiotic resistance and the development of therapeutic regimens for the M. odoratimimus infections.

Indexed as

Genome, BacterialGenomicsDrug Resistance, BacterialEvolution, MolecularFlavobacteriaceaeFlavobacteriaceae InfectionsGenes, BacterialHumansPhylogenyVirulence FactorsVirulence Factorsantibiotic resistance genescomparative genomicsMyroides odoratimimusvirulence factors

Identifiers

PMID29797432
PMCPMC6391281

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.