Evidence map›Paper›PMID 29795194›Full record

ArticleNature communications2018

Postnatal DNA demethylation and its role in tissue maturation.

Yitzhak Reizel, Ofra Sabag, Yael Skversky, Adam Spiro, Benjamin Steinberg, Diana Bernstein, Amber Wang, Julia Kieckhaefer, Catherine Li, Eli Pikarsky and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 82 citations in OpenAlex.

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  15. Detection of Brain-Derived Cell-Free DNA in Plasma.Diagnostics (Basel, Switzerland) · 2024
    Article
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  18. Review
  19. Review
  20. Hepatocyte regeneration is driven by embryo-like DNA methylation reprogramming.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 3 countries.

Yitzhak ReizelDepartment of Developmental Biology and Cancer Research, Hebrew University Medical School, P.O.B. 12272, , Jerusalem, 91120, Israel.
Ofra SabagDepartment of Developmental Biology and Cancer Research, Hebrew University Medical School, P.O.B. 12272, , Jerusalem, 91120, Israel.
Yael SkverskyDepartment of Developmental Biology and Cancer Research, Hebrew University Medical School, P.O.B. 12272, , Jerusalem, 91120, Israel.
Adam SpiroDepartment of Developmental Biology and Cancer Research, Hebrew University Medical School, P.O.B. 12272, , Jerusalem, 91120, Israel.
Benjamin SteinbergDepartment of Developmental Biology and Cancer Research, Hebrew University Medical School, P.O.B. 12272, , Jerusalem, 91120, Israel.
Diana BernsteinDepartment of Genetics and Institute for Diabetes Obesity and Metabolism, Perelman School of Medicine, University of Pennsylvania, 12-126 Translational Research Center, 3400 Civic Center Boulevard Building 421, Philadelphia, PA, 19104-5156, USA.
Amber WangDepartment of Genetics and Institute for Diabetes Obesity and Metabolism, Perelman School of Medicine, University of Pennsylvania, 12-126 Translational Research Center, 3400 Civic Center Boulevard Building 421, Philadelphia, PA, 19104-5156, USA.
Julia KieckhaeferDepartment of Genetics and Institute for Diabetes Obesity and Metabolism, Perelman School of Medicine, University of Pennsylvania, 12-126 Translational Research Center, 3400 Civic Center Boulevard Building 421, Philadelphia, PA, 19104-5156, USA.
Catherine LiBroad Technology Labs (BTL), The Broad Institute of Harvard and MIT, Cambridge, MA, 02142, USA.
Eli PikarskyDepartment of Developmental Biology and Cancer Research, Hebrew University Medical School, P.O.B. 12272, , Jerusalem, 91120, Israel.
Rena Levin-KleinDepartment of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, MN, 55455, USA.
Alon GorenBroad Technology Labs (BTL), The Broad Institute of Harvard and MIT, Cambridge, MA, 02142, USA.ORCID http://orcid.org/0000-0001-5669-9357
Klaus RajewskyImmune Regulation and Cancer Max-Delbrück-Centrum für, Molekulare Medizin (MDC), Robert-Rössle-Strasse 10, Berlin, 13092, Germany.
Klaus H KaestnerDepartment of Genetics and Institute for Diabetes Obesity and Metabolism, Perelman School of Medicine, University of Pennsylvania, 12-126 Translational Research Center, 3400 Civic Center Boulevard Building 421, Philadelphia, PA, 19104-5156, USA.
Howard CedarDepartment of Developmental Biology and Cancer Research, Hebrew University Medical School, P.O.B. 12272, , Jerusalem, 91120, Israel. cedar@mail.huji.ac.il.ORCID http://orcid.org/0000-0001-6472-9640
Hebrew University of Jerusalem · ILUniversity of Pennsylvania · USBroad Institute · USMax Delbrück Center · DEUniversity of Minnesota · US

Funding

VIRAL VECTOR COREP30DK019525 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI Patrick Seale · 1986 to 2026
$48.3M
PREDOCTORAL TRAINING PROGRAM IN PHARMACOLOGYT32GM008076 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI BLENDY, JULIE A · 1985 to 2023
$10.8M
TRAINING IN HEMOGLOBIN &CELL MEMBRANE RESEARCHT32HL007062 · NHLBI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI Jeffrey S. Miller, Gregory M Vercellotti · 1985 to 2026
$10.3M
Epigenetic Rejuvenation of Human Beta-CellsUC4DK104119 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI GLASER, BENJAMIN, KAESTNER, KLAUS H · 2014 to 2014
$3.6M
NHLBI NIH HHS T32 HL007062NIDDK NIH HHS P30 DK019525NIDDK NIH HHS UC4 DK104119NIGMS NIH HHS T32 GM008076NIH HHS 2T32HL007062NIH HHS UC4DK 104119
6 · The paper itself

Abstract

Development in mammals is accompanied by specific de novo and demethylation events that are thought to stabilize differentiated cell phenotypes. We demonstrate that a large percentage of the tissue-specific methylation pattern is generated postnatally. Demethylation in the liver is observed in thousands of enhancer-like sequences associated with genes that undergo activation during the first few weeks of life. Using. conditional gene ablation strategy we show that the removal of these methyl groups is stable and necessary for assuring proper hepatocyte gene expression and function through its effect on chromatin accessibility. These postnatal changes in methylation come about through exposure to hormone signaling. These results define the molecular rules of 5-methyl-cytosine regulation as an epigenetic mechanism underlying cellular responses to. changing environment.

Indexed as

DNA Demethylation5-MethylcytosineAnimalsAnimals, NewbornCells, CulturedDioxygenasesDNA-Binding ProteinsEpigenesis, GeneticFemaleGene Expression Regulation, DevelopmentalHepatocytesHigh-Throughput Nucleotide SequencingLiverMaleMiceMice, Inbred C57BL5-MethylcytosineDioxygenasesDNA-Binding ProteinsProto-Oncogene ProteinsTet2 protein, mouseTet3 protein, mouse

Identifiers

PMID29795194
PMCPMC5966414
OpenAlexW2804602307

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.