Evidence map›Paper›PMID 29794240›Full record

ArticleGenetics2018

Repeated Selection of Alternatively Adapted Haplotypes Creates Sweeping Genomic Remodeling in Stickleback.

Susan Bassham, Julian Catchen, Emily Lescak, Frank A von Hippel, William A Cresko

Abstract read
In one paragraph

Article in Genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed.

  1. Article
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  5. Article
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  7. Article
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  9. Article
  10. Genomic changes underlying repeated niche shifts in an adaptive radiation.Evolution; international journal of organic evolution · 2022
    Article
  11. Article
  12. Article
  13. Population Genomics Analysis with RAD, Reprised: Stacks 2.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  14. Article
  15. Threespine Stickleback: A Model System For Evolutionary Genomics.Annual review of genomics and human genetics · 2021
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Susan BasshamInstitute of Ecology and Evolution, University of Oregon, Eugene, Oregon 97403 wcresko@uoregon.edu sbassham@uoregon.edu jcatchen@illinois.edu.ORCID 0000-0002-7309-2095
Julian CatchenDepartment of Animal Biology, University of Illinois at Urbana-Champaign, Illinois 61801 wcresko@uoregon.edu sbassham@uoregon.edu jcatchen@illinois.edu.ORCID 0000-0002-4798-660X
Emily LescakDepartment of Biological Sciences, University of Alaska Anchorage, Alaska 99508.ORCID 0000-0002-6229-568X
Frank A von HippelDepartment of Biological Sciences , Northern Arizona University, Flagstaff, Arizona 86011.ORCID 0000-0002-9247-0231
William A CreskoInstitute of Ecology and Evolution, University of Oregon, Eugene, Oregon 97403 wcresko@uoregon.edu sbassham@uoregon.edu jcatchen@illinois.edu.ORCID 0000-0002-3496-8074

Funding

The Administrative CoreP20GM103395 · NIGMS · UNIVERSITY OF ALASKA FAIRBANKS · PI STACY M. RASMUS · 2012 to 2026
$66.1M
Rapid and cost-efficient genotyping tools for stuides of threespine sticklebackR24GM079486 · NIGMS · UNIVERSITY OF OREGON · PI CRESKO, WILLIAM A · 2007 to 2010
$708k
Elucidating the effects of structural variation on cis-regulation in sticklebackF32GM095213 · NIGMS · UNIVERSITY OF OREGON · PI CATCHEN, JULIAN MICHAEL · 2010 to 2012
$153k
NIGMS NIH HHS F32 GM095213NIGMS NIH HHS P20 GM103395NIGMS NIH HHS R24 GM079486
6 · The paper itself

Abstract

Heterogeneous genetic divergence can accumulate across the genome when populations adapt to different habitats while still exchanging alleles. How long does diversification take and how much of the genome is affected? When divergence occurs in parallel from standing genetic variation, how often are the same haplotypes involved? We explore these questions using restriction site-associated DNA sequencing genotyping data and show that broad-scale genomic repatterning, fueled by copious standing variation, can emerge in just dozens of generations in replicate natural populations of threespine stickleback fish (

Indexed as

Selection, GeneticAdaptation, BiologicalAlaskaAnimalsEvolution, MolecularGenetics, PopulationGenetic VariationHaplotypesSequence Analysis, DNASmegmamorphacontemporary evolutionecological divergenceGasterosteus aculeatuspopulation genomicsthreespine stickleback

Identifiers

PMID29794240
PMCPMC6028257

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.