Evidence map›Paper›PMID 29794036›Full record

ArticleJournal of lipid research2018

Deep phenotyping in zebrafish reveals genetic and diet-induced adiposity changes that may inform disease risk.

James E N Minchin, Catherine M Scahill, Nicole Staudt, Elisabeth M Busch-Nentwich, John F Rawls

Open access · hybridAbstract read
In one paragraph

Article in Journal of lipid research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

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  13. The use of zebrafish (Animal frontiers : the review magazine of animal agriculture · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

James E N MinchinCentre for Cardiovascular Science, University of Edinburgh, Edinburgh, United Kingdom, EH16 4TJ james.minchin@ed.ac.uk.ORCID 0000-0003-2316-1010
Catherine M ScahillWellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, United Kingdom, CB10 1SA.
Nicole StaudtWellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, United Kingdom, CB10 1SA.
Elisabeth M Busch-NentwichWellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, United Kingdom, CB10 1SA.ORCID 0000-0001-6450-744X
John F RawlsDepartment of Molecular Genetics and Microbiology, Duke University, Durham, NC 27710.ORCID 0000-0002-5976-5206
Duke University · USWellcome Sanger Institute · GBUniversity of Cambridge · GB

Funding

Identifying genes required for digestive physiology and lipid metabolismR01DK093399 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI STEVEN A FARBER, John F Rawls · 2013 to 2026
$7.6M
Organotin influences on assembly and obesogenic activity of the gut microbiotaR21ES023369 · NIEHS · DUKE UNIVERSITY · PI RAWLS, JOHN F · 2014 to 2015
$628k
Mechanisms of Adipose Depot Morphogenesis in ZebrafishR56DK091356 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI RAWLS, JOHN F · 2011 to 2011
$96k
NIDDK NIH HHS R01 DK093399NIDDK NIH HHS R56 DK091356NIEHS NIH HHS R21 ES023369Wellcome Trust 206194
6 · The paper itself

Abstract

The regional distribution of adipose tissues is implicated in a wide range of diseases. For example, proportional increases in visceral adipose tissue increase the risk for insulin resistance, diabetes, and CVD. Zebrafish offer a tractable model system by which to obtain unbiased and quantitative phenotypic information on regional adiposity, and deep phenotyping can explore complex disease-related adiposity traits. To facilitate deep phenotyping of zebrafish adiposity traits, we used pairwise correlations between 67 adiposity traits to generate stage-specific adiposity profiles that describe changing adiposity patterns and relationships during growth. Linear discriminant analysis classified individual fish according to an adiposity profile with 87.5% accuracy. Deep phenotyping of eight previously uncharacterized zebrafish mutants identified

Indexed as

PhenotypeAdiposityAnimalsDietGenetic Predisposition to DiseaseLipid MetabolismZebrafishadipose tissuefat distributionobesity

Identifiers

PMID29794036
PMCPMC6071777
OpenAlexW2803928596

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.