Evidence map›Paper›PMID 29792801›Full record

ArticleAnalytical chemistry2018

Development of a Novel Sulfoxide-Containing MS-Cleavable Homobifunctional Cysteine-Reactive Cross-Linker for Studying Protein-Protein Interactions.

Craig B Gutierrez, Sarah A Block, Clinton Yu, Stephanie M Soohoo, Alexander S Huszagh, Scott D Rychnovsky, Lan Huang

Open access · greenAbstract read
In one paragraph

Article in Analytical chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 52 citations in OpenAlex.

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  15. Shape shifting: The multiple conformational substates of the PTEN N-terminal PIPProtein science : a publication of the Protein Society · 2022
    Article
  16. An optimized protocol forSTAR protocols · 2022
    Article
  17. Article
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  19. Protein interaction landscapes revealed by advanced in vivo cross-linking-mass spectrometry.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Craig B GutierrezDepartment of Physiology and Biophysics , University of California , Irvine , California 92697 , United States.
Sarah A BlockDepartment of Chemistry , University of California , Irvine , California 92697 , United States.ORCID 0000-0002-2487-9377
Clinton YuDepartment of Physiology and Biophysics , University of California , Irvine , California 92697 , United States.
Stephanie M SoohooDepartment of Physiology and Biophysics , University of California , Irvine , California 92697 , United States.
Alexander S HuszaghDepartment of Physiology and Biophysics , University of California , Irvine , California 92697 , United States.
Scott D RychnovskyDepartment of Chemistry , University of California , Irvine , California 92697 , United States.ORCID 0000-0002-7223-4389
Lan HuangDepartment of Physiology and Biophysics , University of California , Irvine , California 92697 , United States.ORCID 0000-0002-3140-4687
University of California, Irvine · US

Funding

Proteomics of the Proteasome Interacting NetworksR01GM074830 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI HUANG, LAN · 2005 to 2022
$6.1M
In Vivo Interactome and Dynamics of Cullin-Ring LigasesR01GM106003 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI HUANG, LAN, RYCHNOVSKY, SCOTT D. · 2013 to 2016
$772k
NIGMS NIH HHS R01 GM074830NIGMS NIH HHS R01 GM106003
6 · The paper itself

Abstract

Cross-linking mass spectrometry (XL-MS) has become an emerging technology for defining protein-protein interactions (PPIs) and elucidating architectures of large protein complexes. Up to now, the most widely used cross-linking reagents target lysines. Although such reagents have been successfully applied to map PPIs at the proteome-wide scale, comprehensive PPI profiling would require additional cross-linking chemistries. Cysteine is one of the most reactive amino acids and an attractive target for cross-linking owing to its unique role in protein structures. Although sulfhydryl-reactive cross-linkers are commercially available, their applications in XL-MS studies remain sparse, likely due to the difficulty in identifying cysteine cross-linked peptides. Previously, we developed a new class of sulfoxide-containing MS-cleavable cross-linkers to enable fast and accurate identification of cross-linked peptides using multistage tandem mass spectrometry (MS

Indexed as

Protein Interaction MappingAnimalsCattleCross-Linking ReagentsCysteineMolecular StructureProtein BindingSerum Albumin, BovineSulfoxidesTandem Mass SpectrometryCross-Linking ReagentsCysteineSerum Albumin, BovineSulfoxides

Identifiers

PMID29792801
PMCPMC6037416
OpenAlexW2803977514

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.