Evidence map›Paper›PMID 29792162›Full record

ArticleBMC genomics2018

Overlapping but distinct topology for zebrafish V2R-like olfactory receptors reminiscent of odorant receptor spatial expression zones.

Gaurav Ahuja, Vera Reichel, Daniel Kowatschew, Adnan S Syed, Aswani Kumar Kotagiri, Yuichiro Oka, Franco Weth, Sigrun I Korsching

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.4field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
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  4. Article
  5. Coding of pheromones by vomeronasal receptors.Cell and tissue research · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Gaurav AhujaInstitute of Genetics, University at Cologne, Zülpicher Str. 47A, 50674, Cologne, Germany. gaurav.ahuja@uk-koeln.de.
Vera ReichelInstitute of Genetics, University at Cologne, Zülpicher Str. 47A, 50674, Cologne, Germany.
Daniel KowatschewInstitute of Genetics, University at Cologne, Zülpicher Str. 47A, 50674, Cologne, Germany.
Adnan S SyedInstitute of Genetics, University at Cologne, Zülpicher Str. 47A, 50674, Cologne, Germany.
Aswani Kumar KotagiriInstitute of Genetics, University at Cologne, Zülpicher Str. 47A, 50674, Cologne, Germany.
Yuichiro OkaInstitute of Genetics, University at Cologne, Zülpicher Str. 47A, 50674, Cologne, Germany.
Franco WethKarlsruher Institut fuer Technologie (KIT) - Campus Sued, Zoologisches Institut, Abteilung fuer Zell- und Neurobiologie, Fritz-Haber-Weg 4, 76131, Karlsruhe, Germany.
Sigrun I KorschingInstitute of Genetics, University at Cologne, Zülpicher Str. 47A, 50674, Cologne, Germany. sigrun.korsching@uni-koeln.de.ORCID http://orcid.org/0000-0002-5450-172X
University of Cologne · DEKarlsruhe Institute of Technology · DETH Köln - University of Applied Sciences · DE

Funding

German Science foundation 1046/7-1
6 · The paper itself

Abstract

backgroundThe sense of smell is unrivaled in terms of molecular complexity of its input channels. Even zebrafish, a model vertebrate system in many research fields including olfaction, possesses several hundred different olfactory receptor genes, organized in four different gene families. For one of these families, the initially discovered odorant receptors proper, segregation of expression into distinct spatial subdomains within a common sensory surface has been observed both in teleost fish and in mammals. However, for the remaining three families, little to nothing was known about their spatial coding logic. Here we wished to investigate, whether the principle of spatial segregation observed for odorant receptors extends to another olfactory receptor family, the V2R-related OlfC genes. Furthermore we thought to examine, how expression of OlfC genes is integrated into expression zones of odorant receptor genes, which in fish share a single sensory surface with OlfC genes.

resultsTo select representative genes, we performed a comprehensive phylogenetic study of the zebrafish OlfC family, which identified a novel OlfC gene, reduced the number of pseudogenes to 1, and brought the total family size to 60 intact OlfC receptors. We analyzed the spatial pattern of OlfC-expressing cells for seven representative receptors in three dimensions (height within the epithelial layer, horizontal distance from the center of the olfactory organ, and height within the olfactory organ). We report non-random distributions of labeled neurons for all OlfC genes analysed. Distributions for sparsely expressed OlfC genes are significantly different from each other in nearly all cases, broad overlap notwithstanding. For two of the three coordinates analyzed, OlfC expression zones are intercalated with those of odorant receptor zones, whereas in the third dimension some segregation is observed.

conclusionOur results show that V2R-related OlfC genes follow the same spatial logic of expression as odorant receptors and their expression zones intermingle with those of odorant receptor genes. Thus, distinctly different expression zones for individual receptor genes constitute a general feature shared by teleost and tetrapod V2R/OlfC and odorant receptor families alike.

Indexed as

Gene Expression ProfilingAnimalsReceptors, OdorantSmellZebrafishZebrafish ProteinsReceptors, OdorantZebrafish ProteinsIn situ hybridizationMicrovillous neuronsOlfactory receptorsSpatial distributionV2RsZebrafish

Identifiers

PMID29792162
PMCPMC5966872
OpenAlexW2807012121

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.