Evidence map›Paper›PMID 29791771›Full record

ArticleProteomics2018

Minimal Information About an Immuno-Peptidomics Experiment (MIAIPE).

Jennie R Lill, Peter A van Veelen, Stefan Tenzer, Arie Admon, Etienne Caron, Joshua E Elias, Albert J R Heck, Miguel Marcilla, Fabio Marino, Markus Müller and 7 more

Abstract read
In one paragraph

Article in Proteomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. The Immunopeptidomics Ontology (ImPO).Database : the journal of biological databases and curation · 2024
    Article
  3. Article
  4. Review
  5. Origins, Technological Advancement, and Applications of Peptidomics.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. T Cell Epitope Predictions.Annual review of immunology · 2020
    Review
  11. Article
  12. Article
  13. Apparent Lack ofFrontiers in immunology · 2019
    Article
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Jennie R LillDepartment of Microchemistry, Proteomics and Lipidomics, Genentech Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Peter A van VeelenCenter for Proteomics and Metabolomics, Leiden University Medical Center, Albinusdreef 2, 2333, ZA Leiden, The Netherlands.
Stefan TenzerInstitute for Immunology, University Medical Center of the Johannes Gutenberg University Mainz, Langenbeckstr. 1, 55131, Mainz, Germany.ORCID 0000-0003-3034-0017
Arie AdmonFaculty of Biology, Technion-Israel Institute of Technology, Haifa, 3200003, Israel.ORCID 0000-0003-0504-3950
Etienne CaronDepartment of Biology, Institute of Molecular Systems Biology, ETH Zurich, 8093, Zurich, Switzerland.
Joshua E EliasDepartment of Chemical and Systems Biology, Stanford University, Stanford, CA, 94305, USA.
Albert J R HeckBiomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Science4Life, Utrecht University, Padualaan 8, 3584, CH Utrecht, The Netherlands.
Miguel MarcillaProteomics Unit, Spanish National Biotechnology Centre, Madrid, 28049, Spain.
Fabio MarinoLudwig Institute for Cancer Research, University of Lausanne, 1066, Epalinges, Switzerland.ORCID 0000-0003-4211-5685
Markus MüllerVital IT, Swiss Institute of Bioinformatics, 1015, Lausanne, Switzerland.
Bjoern PetersLa Jolla Institute for Allergy and Immunology, Division of Vaccine Discovery, La Jolla, CA, 92037, USA.
Anthony PurcellInfection and Immunity Program, Department of Biochemistry and Molecular Biology, Monash Biomedicine Discovery Institute, Monash University, Clayton, 3800, Australia.ORCID 0000-0003-0532-8331
Alessandro SetteLa Jolla Institute for Allergy and Immunology, Division of Vaccine Discovery, La Jolla, CA, 92037, USA.
Theo SturmBiomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Science4Life, Utrecht University, Padualaan 8, 3584, CH Utrecht, The Netherlands.
Nicola TernetteThe Jenner Institute, Target Discovery Institute Mass Spectrometry Laboratory, University of Oxford, Oxford, OX3 7FZ, UK.ORCID 0000-0002-9283-0743
Juan Antonio VizcaínoEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.ORCID 0000-0002-3905-4335
Michal Bassani-SternbergLudwig Institute for Cancer Research, University of Lausanne, 1066, Epalinges, Switzerland.ORCID 0000-0002-1934-954X

Funding

Modeling the Molecular Determinants of Induced Anti-Tumor Immune Responses in Mantle Cell LymphomaU01CA194389 · NCI · STANFORD UNIVERSITY · PI ALIZADEH, ASH ARASH, DAVIS, MARK MORRIS · 2015 to 2019
$3.1M
Advancing data and metadata standards for proteomics mass spectraR24GM127667 · NIGMS · INSTITUTE FOR SYSTEMS BIOLOGY · PI DEUTSCH, ERIC · 2017 to 2019
$1.2M
NCI NIH HHS U01 CA194389NIGMS NIH HHS R24 GM127667
6 · The paper itself

Abstract

Minimal information about an immuno-peptidomics experiment (MIAIPE) is an initiative of the members of the Human Immuno-Peptidome Project (HIPP), an international program organized by the Human Proteome Organization (HUPO). The aim of the MIAIPE guidelines is to deliver technical guidelines representing the minimal information required to sufficiently support the evaluation and interpretation of immunopeptidomics experiments. The MIAIPE document has been designed to report essential information about sample preparation, mass spectrometric measurement, and associated mass spectrometry (MS)-related bioinformatics aspects that are unique to immunopeptidomics and may not be covered by the general proteomics MIAPE (minimal information about a proteomics experiment) guidelines.

Indexed as

SoftwareComputational BiologyDatabases, ProteinHistocompatibility Antigens Class IHistocompatibility Antigens Class IIHumansPeptide FragmentsProteomicsSpecimen HandlingHistocompatibility Antigens Class IHistocompatibility Antigens Class IIPeptide Fragmentsantigen processing and presentationimmunopeptidomicsmajor histocompatibility complex

Identifiers

PMID29791771
PMCPMC6033177

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.