Evidence map›Paper›PMID 29791506›Full record

ArticlePLoS pathogens2018

SHMT2 and the BRCC36/BRISC deubiquitinase regulate HIV-1 Tat K63-ubiquitylation and destruction by autophagy.

Muyu Xu, James J Moresco, Max Chang, Amey Mukim, Davey Smith, Jolene K Diedrich, John R Yates, Katherine A Jones

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 48 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Muyu XuRegulatory Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, United States of America.
James J MorescoMass Spectrometry Core for Proteomics and Metabolomics, The Salk Institute for Biological Studies, La Jolla, CA, United States of America.
Max ChangRazavi Newman Integrative Genomics and Bioinformatics Core, The Salk Institute for Biological Studies, La Jolla, CA, United States of America.ORCID 0000-0002-4526-489X
Amey MukimDivision of Infectious Diseases, University of California San Diego School of Medicine, La Jolla, CA, United States of America.
Davey SmithDivision of Infectious Diseases, University of California San Diego School of Medicine, La Jolla, CA, United States of America.
Jolene K DiedrichMass Spectrometry Core for Proteomics and Metabolomics, The Salk Institute for Biological Studies, La Jolla, CA, United States of America.ORCID 0000-0001-6489-4558
John R YatesDepartment of Molecular Medicine, Scripps Research Institute, La Jolla, CA, United States of America.ORCID 0000-0001-5267-1672
Katherine A JonesRegulatory Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, United States of America.ORCID 0000-0002-2004-0478
Salk Institute for Biological Studies · USScripps Research Institute · USUniversity of California San Diego · US

Funding

VirologyP30AI036214 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI David Mitchell Smith · 1994 to 2026
$78.4M
TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI YATES III, JOHN R · 2012 to 2021
$20.7M
CYCLIN T AND HIV1 TAT TRANSACTIVATIONR01AI044615 · NIAID · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI JONES, KATHERINE A · 1999 to 2016
$6.9M
Mechanism of beta-catenin and APC-regulated transcription of Wnt target genesR01CA125535 · NCI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI JONES, KATHERINE A · 2007 to 2017
$4.5M
Cyclin T and HIV1 Tat TransactivationR56AI044615 · NIAID · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI JONES, KATHERINE A · 2009 to 2009
$474k
NCI NIH HHS R01 CA125535NIAID NIH HHS P30 AI036214NIAID NIH HHS R01 AI044615NIAID NIH HHS R56 AI044615NIGMS NIH HHS P41 GM103533
6 · The paper itself

Abstract

HIV-1 Tat is a key regulator of viral transcription, however little is known about the mechanisms that control its turnover in T cells. Here we use a novel proteomics technique, called DiffPOP, to identify the molecular target of JIB-04, a small molecule compound that potently and selectively blocks HIV-1 Tat expression, transactivation, and virus replication in T cell lines. Mass-spectrometry analysis of whole-cell extracts from 2D10 Jurkat T cells revealed that JIB-04 targets Serine Hydroxymethyltransferase 2 (SHMT2), a regulator of glycine biosynthesis and an adaptor for the BRCC36 K63Ub-specific deubiquitinase in the BRISC complex. Importantly, knockdown of SHMT1,2 or BRCC36, or exposure of cells to JIB-04, strongly increased Tat K63Ub-dependent destruction via autophagy. Moreover, point mutation of multiple lysines in Tat, or knockdown of BRCC36 or SHMT1,2, was sufficient to prevent destruction of Tat by JIB-04. We conclude that HIV-1 Tat levels are regulated through K63Ub-selective autophagy mediated through SHMT1,2 and the BRCC36 deubiquitinase.

Indexed as

AminopyridinesAutophagyDeubiquitinating EnzymesGene ExpressionGlycine HydroxymethyltransferaseHeLa CellsHumansHydrazonesImmune SeraImmunoprecipitationMembrane ProteinsRNA, Viraltat Gene Products, Human Immunodeficiency VirusTranscriptional ActivationUbiquitinationAminopyridinesBRCC3 protein, humanDeubiquitinating EnzymesGlycine HydroxymethyltransferaseHydrazonesImmune SeraJIB-04Membrane ProteinsRNA, ViralSHMT protein, humantat Gene Products, Human Immunodeficiency Virus

Identifiers

PMID29791506
PMCPMC5988312
OpenAlexW2803379547

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.