Evidence map›Paper›PMID 29790873›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2018

Diversity of genetic events associated with MLH1 promoter methylation in Lynch syndrome families with heritable constitutional epimutation.

Julie Leclerc, Cathy Flament, Tonio Lovecchio, Lucie Delattre, Emilie Ait Yahya, Stéphanie Baert-Desurmont, Nelly Burnichon, Myriam Bronner, Odile Cabaret, Sophie Lejeune and 8 more

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
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  13. Genes · 2023
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  17. International journal of molecular sciences · 2023
    Review
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 9 institutions in 1 country.

Julie LeclercInserm UMR-S 1172, JPA Research Center, Lille University, and Department of Biochemistry and Molecular Biology, Lille University Hospital, Lille, France. julie.leclerc@inserm.fr.
Cathy FlamentDepartment of Biochemistry and Molecular Biology, Lille University Hospital, Lille, France.
Tonio LovecchioDepartment of Biochemistry and Molecular Biology, Lille University Hospital, Lille, France.
Lucie DelattreDepartment of Biochemistry and Molecular Biology, Lille University Hospital, Lille, France.
Emilie Ait YahyaBioinformatics Unit, Molecular Biology Facility, Lille University Hospital, Lille, France.
Stéphanie Baert-DesurmontDepartment of Genetics, Rouen University Hospital, and Normandie Université, UNIROUEN, Inserm U1245, Normandy Centre for Genomic and Personalized Medicine, Rouen, France.
Nelly BurnichonInserm UMR970, Paris-Cardiovascular Research Center, and Department of Genetics, Georges Pompidou European Hospital, Paris, France.
Myriam BronnerDepartment of Genetics, Nancy University Hospital, Vandœuvre-lès-Nancy, France.
Odile CabaretDepartment of Biology and Pathology, Gustave Roussy Institute, Villejuif, France.
Sophie LejeuneDepartment of Genetics, Lille University Hospital, Lille, France.
Rosine GuimbaudDepartment of Oncogenetics, Claudius Regaud Institute, IUCT-Oncopôle, Toulouse, France.
Gilles MorinDepartment of Genetics, Amiens University Hospital, Amiens, France.
Jacques MauillonDepartment of Genetics, Rouen University Hospital, Normandy Centre for Genomic and Personalized Medicine, Rouen, France.
Philippe JonveauxDepartment of Genetics, Nancy University Hospital, and Inserm U954, University of Lorraine, Vandœuvre-lès-Nancy, France.
Pierre Laurent-PuigDepartment of Biology, Georges Pompidou European Hospital, Paris, France.
Thierry FrébourgDepartment of Genetics, Rouen University Hospital, and Normandie Université, UNIROUEN, Inserm U1245, Normandy Centre for Genomic and Personalized Medicine, Rouen, France.
Nicole PorchetInserm UMR-S 1172, JPA Research Center, Lille University, and Department of Biochemistry and Molecular Biology, Lille University Hospital, Lille, France.
Marie-Pierre BuisineInserm UMR-S 1172, JPA Research Center, Lille University, and Department of Biochemistry and Molecular Biology, Lille University Hospital, Lille, France.
Inserm · FRUniversité de Lille · FRCentre Hospitalier Régional et Universitaire de Nancy · FRCentre Hospitalier Universitaire Amiens-Picardie · FRHôpital Européen Georges-Pompidou · FRInstitut Claudius Regaud · FRInstitut Gustave Roussy · FRLille’s Cardiology Hospital · FRUniversité de Rouen Normandie · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeConstitutional epimutations are an alternative to genetic mutations in the etiology of genetic diseases. Some of these epimutations, termed secondary, correspond to the epigenetic effects of cis-acting genetic defects transmitted to the offspring following a Mendelian inheritance pattern. In Lynch syndrome, a few families with such apparently heritable MLH1 epimutations have been reported so far.

methodsWe designed a long-range polymerase chain reaction next-generation sequencing strategy to screen MLH1 entire gene and applied it to 4 French families with heritable epimutations and 10 additional patients with no proven transmission of their epimutations.

resultsThis strategy successfully detected the insertion of an Alu element in MLH1 coding sequence in one family. Two previously unreported MLH1 variants were also identified in other epimutation carriers: a nucleotide substitution within intron 1 and a single-nucleotide deletion in the 5'-UTR. Detection of a partial MLH1 duplication in another family required multiplex ligation-dependent probe amplification technology. We demonstrated the segregation of these variants with MLH1 methylation and studied the functional consequences of these defects on transcription.

conclusionThis is the largest cohort of patients with MLH1 secondary epimutations associated with a broad spectrum of genetic defects. This study provides further insight into the complexity of molecular mechanisms leading to secondary epimutations.

Indexed as

Epigenesis, GeneticGenetic Predisposition to DiseaseAdultAllelesAlu ElementsColorectal Neoplasms, Hereditary NonpolyposisDNA MethylationFemaleHaplotypesHeterozygoteHigh-Throughput Nucleotide SequencingHumansIntronsMaleMiddle AgedMutationMLH1 protein, humanMutL Protein Homolog 1constitutional epimutationLynch syndromeMLH1 promoter methylationsecondary epimutationstructural variants

Identifiers

PMID29790873
OpenAlexW2798086172

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.