Evidence map›Paper›PMID 29789968›Full record

ArticleNeurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology2018

Exploring the mechanistic insights of Cas scaffolding protein family member 4 with protein tyrosine kinase 2 in Alzheimer's disease by evaluating protein interactions through molecular docking and dynamic simulations.

Mubashir Hassan, Saba Shahzadi, Hany Alashwal, Nazar Zaki, Sung-Yum Seo, Ahmed A Moustafa

Abstract read
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In one paragraph

Article in Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.7field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
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  3. Article
  4. Article
  5. Article
  6. Article
  7. Alzheimer's Disease: An Updated Overview of Its Genetics.International journal of molecular sciences · 2023
    Review
  8. The relationship of early- and late-onset Alzheimer's disease genes with COVID-19.Journal of neural transmission (Vienna, Austria : 1996) · 2022
    Review
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 4 countries.

Mubashir HassanDepartment of Biological Sciences, College of Natural Sciences, Kongju National University, Gongjudehak-Ro 56, Gongju, Chungnam-do, 32588, Republic of Korea.
Saba ShahzadiInstitute of Molecular Science and Bioinformatics, Lahore, Pakistan.
Hany AlashwalCollege of Information Technology, Department of Computer Science and Software Engineering, United Arab Emirates University, Al-Ain, 15551, United Arab Emirates.
Nazar ZakiCollege of Information Technology, Department of Computer Science and Software Engineering, United Arab Emirates University, Al-Ain, 15551, United Arab Emirates.
Sung-Yum SeoDepartment of Biological Sciences, College of Natural Sciences, Kongju National University, Gongjudehak-Ro 56, Gongju, Chungnam-do, 32588, Republic of Korea. dnalove@kongju.ac.kr.
Ahmed A MoustafaSchool of Social Sciences and Psychology, Western Sydney University, Sydney, New South Wales, Australia. A.Moustafa@westernsydney.edu.au.ORCID http://orcid.org/0000-0003-2532-1866
Kongju National University · KRUnited Arab Emirates University · AEInstitute of Molecular Sciences and Bioinformatics · PKWestern Sydney University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cas scaffolding protein family member 4 and protein tyrosine kinase 2 are signaling proteins, which are involved in neuritic plaques burden, neurofibrillary tangles, and disruption of synaptic connections in Alzheimer's disease. In the current study, a computational approach was employed to explore the active binding sites of Cas scaffolding protein family member 4 and protein tyrosine kinase 2 proteins and their significant role in the activation of downstream signaling pathways. Sequential and structural analyses were performed on Cas scaffolding protein family member 4 and protein tyrosine kinase 2 to identify their core active binding sites. Molecular docking servers were used to predict the common interacting residues in both Cas scaffolding protein family member 4 and protein tyrosine kinase 2 and their involvement in Alzheimer's disease-mediated pathways. Furthermore, the results from molecular dynamic simulation experiment show the stability of targeted proteins. In addition, the generated root mean square deviations and fluctuations, solvent-accessible surface area, and gyration graphs also depict their backbone stability and compactness, respectively. A better understanding of CAS and their interconnected protein signaling cascade may help provide a treatment for Alzheimer's disease. Further, Cas scaffolding protein family member 4 could be used as a novel target for the treatment of Alzheimer's disease by inhibiting the protein tyrosine kinase 2 pathway.

Indexed as

Molecular Docking SimulationNonlinear DynamicsAdaptor Proteins, Signal TransducingAlzheimer DiseaseAnimalsBinding SitesFemaleFocal Adhesion Kinase 1HumansMaleProtein BindingProtein ConformationProtein Interaction Domains and MotifsSignal TransductionAdaptor Proteins, Signal TransducingCASS4 protein, humanFocal Adhesion Kinase 1Alzheimer’s diseaseCASS4Dynamic simulationMolecular dockingPTK2

Identifiers

PMID29789968
OpenAlexW2804255833

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.