Evidence map›Paper›PMID 29789923›Full record

ArticlePlanta2018

The HAF2 protein shapes histone acetylation levels of PRR5 and LUX loci in Arabidopsis.

Kyounghee Lee, Pil Joon Seo

Abstract read
PubMed Publisher
In one paragraph

Article in Planta, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 23 citations in OpenAlex.

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  14. TheFrontiers in plant science · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Kyounghee LeeDepartment of Biological Sciences, Sungkyunkwan University, Suwon, 16419, Republic of Korea.
Pil Joon SeoDepartment of Biological Sciences, Sungkyunkwan University, Suwon, 16419, Republic of Korea. pjseo1@skku.edu.ORCID http://orcid.org/0000-0002-5499-3138
Sungkyunkwan University · KR

Funding

National Research Foundation of Korea NRF-2016R1D1A1B03931139National Research Foundation of Korea NRF-2017R1A4A1015620
6 · The paper itself

Abstract

MAIN

conclusionThe histone acetyltransferase HAF2 facilitates H3 acetylation deposition at the PRR5 and LUX promoters to contribute to robust circadian oscillation. The circadian clock ensures synchronization of endogenous rhythmic processes with environmental cycles. Multi-layered regulation underlies precise circadian oscillation, and epigenetic regulation is emerging as a crucial scheme for robust circadian maintenance. Here, we report that HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 2 (HAF2) is involved in circadian homeostasis. The HAF2 gene is activated at midday, and its temporal expression is shaped by CIRCADIAN CLOCK-ASSOCIATED 1. The midday-activated HAF2 protein stimulates H3 acetylation (H3ac) deposition at the PRR5 and LUX loci, contributing to establishment of the raising phase. These results indicate that epigenetic waves in circadian networks underlie temporal compartmentalization of circadian components and stable maintenance of circadian oscillation.

Indexed as

Circadian RhythmEpigenesis, GeneticAcetylationArabidopsisArabidopsis ProteinsHistonesTranscription FactorsArabidopsis ProteinsHAF2 protein, ArabidopsisHistonesLux Arrhythmo protein, ArabidopsisPRR5 protein, ArabidopsisTranscription FactorsCircadian clockEpigenetic modificationHAF2Histone acetylation

Identifiers

PMID29789923
OpenAlexW2804931696

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.