Evidence map›Paper›PMID 29789392›Full record

ArticleThe EMBO journal2018

FAM35A associates with REV7 and modulates DNA damage responses of normal and BRCA1-defective cells.

Junya Tomida, Kei-Ichi Takata, Sarita Bhetawal, Maria D Person, Hsueh-Ping Chao, Dean G Tang, Richard D Wood

Open access · hybridAbstract read
In one paragraph

Article in The EMBO journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 101 citations in OpenAlex.

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  9. eLife · 2024
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10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Junya TomidaDepartment of Epigenetics & Molecular Carcinogenesis, The University of Texas MD Anderson Cancer Center, Smithville, TX, USA jtomida@mdanderson.org rwood@mdanderson.org.ORCID 0000-0002-0813-5757
Kei-Ichi TakataDepartment of Epigenetics & Molecular Carcinogenesis, The University of Texas MD Anderson Cancer Center, Smithville, TX, USA.
Sarita BhetawalDepartment of Epigenetics & Molecular Carcinogenesis, The University of Texas MD Anderson Cancer Center, Smithville, TX, USA.
Maria D PersonProteomics Facility, University of Texas at Austin, Austin, TX, USA.
Hsueh-Ping ChaoDepartment of Epigenetics & Molecular Carcinogenesis, The University of Texas MD Anderson Cancer Center, Smithville, TX, USA.
Dean G TangDepartment of Pharmacology and Therapeutics, Roswell Park Cancer Institute, Buffalo, NY, USA.
Richard D WoodDepartment of Epigenetics & Molecular Carcinogenesis, The University of Texas MD Anderson Cancer Center, Smithville, TX, USA jtomida@mdanderson.org rwood@mdanderson.org.ORCID 0000-0002-9495-6892
The University of Texas MD Anderson Cancer Center · USRoswell Park Comprehensive Cancer Center · US

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
Recognition and processing of complex lesions by components from multiple DNAP01CA097175 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI NAIRN, RODNEY S · 2004 to 2014
$15.3M
Project 4: Coordinating Nucleolytic Pathways During Crosslink RepairP01CA193124 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI WOOD, RICHARD D · 2017 to 2022
$9.6M
Function of REV3L in limiting oncogenesis via DNA damage toleranceR01CA132840 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI WOOD, RICHARD D · 2009 to 2013
$1.6M
Loss of novel end joining factor with dysfunction of BRCA1 contributes to treatment resistanceR03CA212556 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI TOMIDA, JUNYA · 2017 to 2018
$160k
NCI NIH HHS P01 CA097175NCI NIH HHS P01 CA193124NCI NIH HHS P30 CA016672NCI NIH HHS R01 CA132840NCI NIH HHS R03 CA212556
6 · The paper itself

Abstract

To exploit vulnerabilities of tumors, it is urgent to identify associated defects in genome maintenance. One unsolved problem is the mechanism of regulation of DNA double-strand break repair by REV7 in complex with 53BP1 and RIF1, and its influence on repair pathway choice between homologous recombination and non-homologous end-joining. We searched for REV7-associated factors in human cells and found FAM35A, a previously unstudied protein with an unstructured N-terminal region and a C-terminal region harboring three OB-fold domains similar to single-stranded DNA-binding protein RPA, as novel interactor of REV7/RIF1/53BP1. FAM35A re-localized in damaged cell nuclei, and its knockdown caused sensitivity to DNA-damaging agents. In a BRCA1-mutant cell line, however, depletion of FAM35A increased resistance to camptothecin, suggesting that FAM35A participates in processing of DNA ends to allow more efficient DNA repair. We found FAM35A absent in one widely used BRCA1-mutant cancer cell line (HCC1937) with anomalous resistance to PARP inhibitors. A survey of FAM35A alterations revealed that the gene is altered at the highest frequency in prostate cancers (up to 13%) and significantly less expressed in metastatic cases, revealing promise for FAM35A as a therapeutically relevant cancer marker.

Indexed as

DNA DamageDNA RepairBiomarkers, TumorBRCA1 ProteinCell Cycle ProteinsCell Line, TumorDNA-Binding ProteinsDNA, NeoplasmHEK293 CellsHumansMad2 ProteinsMutationNeoplasmsProteinsTelomere-Binding ProteinsTumor Suppressor p53-Binding Protein 1Biomarkers, TumorBRCA1 ProteinBRCA1 protein, humanCell Cycle ProteinsDNA-Binding ProteinsDNA, NeoplasmMAD2L2 protein, humanMad2 ProteinsProteinsRif1 protein, humanSHLD2 protein, humanTelomere-Binding ProteinsTP53BP1 protein, humanTumor Suppressor p53-Binding Protein 1camptothecincisplatinDNA repairolaparibprostate cancer

Identifiers

PMID29789392
PMCPMC6003645
OpenAlexW2791859276

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.