Evidence map›Paper›PMID 29789313›Full record

ArticleG3 (Bethesda, Md.)2018

BLAST-XYPlot Viewer: A Tool for Performing BLAST in Whole-Genome Sequenced Bacteria/Archaea and Visualize Whole Results Simultaneously.

Yagul Pedraza-Pérez, Rodrigo Alberto Cuevas-Vede, Ángel Bernardo Canto-Gómez, Liliana López-Pliego, Rosa María Gutiérrez-Ríos, Ismael Hernández-Lucas, Gustavo Rubín-Linares, Ygnacio Martínez-Laguna, Jesús Francisco López-Olguín, Luis Ernesto Fuentes-Ramírez

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yagul Pedraza-PérezInstituto de Ciencias.ORCID 0000-0002-3873-4611
Rodrigo Alberto Cuevas-VedeFacultad de Ciencias de la Computación, Benemérita Universidad Autónoma de Puebla, Puebla, Pue., México CP 72570.ORCID 0000-0002-0779-0987
Ángel Bernardo Canto-GómezInstituto de Ciencias.
Liliana López-PliegoInstituto de Ciencias.ORCID 0000-0001-6339-9491
Rosa María Gutiérrez-RíosInstituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, Mor., México CP 62210.ORCID 0000-0002-0603-3810
Ismael Hernández-LucasInstituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, Mor., México CP 62210.
Gustavo Rubín-LinaresFacultad de Ciencias de la Computación, Benemérita Universidad Autónoma de Puebla, Puebla, Pue., México CP 72570.
Ygnacio Martínez-LagunaInstituto de Ciencias.
Jesús Francisco López-OlguínInstituto de Ciencias.
Luis Ernesto Fuentes-RamírezInstituto de Ciencias luis.fuentes@correo.buap.mx.ORCID 0000-0002-8053-7742

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

One of the most commonly used tools to compare protein or DNA sequences against databases is BLAST. We introduce a web tool that allows the performance of BLAST-searches of protein/DNA sequences in whole-genome sequenced bacteria/archaea, and displays a large amount of BLAST-results simultaneously. The circular bacterial replicons are projected as horizontal lines with fixed length of 360, representing the degrees of a circle. A coordinate system is created with length of the replicon along the

Indexed as

SoftwareArchaeaBacteriaComputational BiologyDatabases, GeneticGenome, ArchaealGenome, BacterialGenomicsUser-Computer InterfaceWhole Genome Sequencingbacterial genomesBLAST-XYPlot viewerlarge scale BLASToperon search

Identifiers

PMID29789313
PMCPMC6027881

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.