Evidence map›Paper›PMID 29787608›Full record

ArticlePloS one2018

Loci under selection and markers associated with host plant and host-related strains shape the genetic structure of Brazilian populations of Spodoptera frugiperda (Lepidoptera, Noctuidae).

Karina Lucas Silva-Brandão, Aline Peruchi, Noemy Seraphim, Natália Faraj Murad, Renato Assis Carvalho, Juliano Ricardo Farias, Celso Omoto, Fernando Luis Cônsoli, Antonio Figueira, Marcelo Mendes Brandão

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 29 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Karina Lucas Silva-BrandãoCentro de Energia Nuclear na Agricultura, Universidade de São Paulo, Campus "Luiz de Queiroz", Laboratório de Melhoramento de Plantas, Piracicaba, São Paulo, Brazil.ORCID 0000-0002-6423-424X
Aline PeruchiCentro de Energia Nuclear na Agricultura, Universidade de São Paulo, Campus "Luiz de Queiroz", Laboratório de Melhoramento de Plantas, Piracicaba, São Paulo, Brazil.
Noemy SeraphimInstituto Federal de Educação, Ciência e Tecnologia de São Paulo, campus Campinas CTI Renato Archer, Campinas, São Paulo, Brazil.
Natália Faraj MuradPrograma de Pós-graduação em Genética e Biologia Molecular, Centro de Biologia Molecular e Engenharia Genética, Universidade Estadual de Campinas, Campinas, São Paulo, Brazil.
Renato Assis CarvalhoMonsanto do Brasil Ltda, São Paulo, São Paulo, Brazil.
Juliano Ricardo FariasInstituto Phytus, Departamento de Entomologia, Rua Duque de Caxias, Santa Maria, Rio Grande do Sul, Brazil.
Celso OmotoEscola Superior de Agricultura "Luiz de Queiroz", Universidade de São Paulo, Departamento de Entomologia e Acarologia, Piracicaba, São Paulo, Brazil.
Fernando Luis CônsoliEscola Superior de Agricultura "Luiz de Queiroz", Universidade de São Paulo, Departamento de Entomologia e Acarologia, Piracicaba, São Paulo, Brazil.
Antonio FigueiraCentro de Energia Nuclear na Agricultura, Universidade de São Paulo, Campus "Luiz de Queiroz", Laboratório de Melhoramento de Plantas, Piracicaba, São Paulo, Brazil.
Marcelo Mendes BrandãoCentro de Biologia Molecular e Engenharia Genética, Universidade Estadual de Campinas, Campinas, São Paulo, Brazil.
Universidade de São Paulo · BRUniversidade Estadual de Campinas (UNICAMP) · BRFederal Institute of São Paulo · BRMonsanto (Brazil) · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We applied the ddRAD genotyping-by-sequencing technique to investigate the genetic distinctiveness of Brazilian populations of the noctuid moth Spodoptera frugiperda, the fall armyworm (FAW), and the role of host-plant association as a source of genetic diversification. By strain-genotyping all field-collected individuals we found that populations collected from corn were composed primarily of corn-strain individuals, while the population collected from rice was composed almost entirely of rice-strain individuals. Outlier analyses indicated 1,184 loci putatively under selection (ca. 15% of the total) related to 194 different Gene Ontologies (GOs); the most numerous GOs were nucleotide binding, ATP binding, metal-ion binding and nucleic-acid binding. The association analyses indicated 326 loci associated with the host plant, and 216 loci associated with the individual strain, including functions related to Bacillus thuringiensis and insecticide resistance. The genetic-structure analyses indicated a moderate level of differentiation among all populations, and lower genetic structure among populations collected exclusively from corn, which suggests that the population collected from rice has a strong influence on the overall genetic structure. Populations of S. frugiperda are structured partially due to the host plant, and pairs of populations using the same host plant are more genetically similar than pairs using different hosts. Loci putatively under selection are the main factors responsible for the genetic structure of these populations, which indicates that adaptive selection on important traits, including the response to control tactics, is acting in the genetic differentiation of FAW populations in Brazil.

Indexed as

Genetic MarkersGenetics, PopulationSelection, GeneticAdenosine TriphosphateAllelesAnimalsBacillus thuringiensisBayes TheoremBrazilEcologyGene LibraryGene OntologyGenotypeGeographyInsecticide ResistanceOryzaAdenosine TriphosphateGenetic Markers

Identifiers

PMID29787608
PMCPMC5963752
OpenAlexW2803914958

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.