Evidence map›Paper›PMID 29787239›Full record

ArticleBiochemistry2018

Catalytic Bases and Stereocontrol in Lamiaceae Class II Diterpene Cyclases.

Samuel Schulte, Kevin C Potter, Cody Lemke, Reuben J Peters

Abstract read
In one paragraph

Article in Biochemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Samuel SchulteRoy J. Carver Department of Biochemistry, Biophysics & Molecular Biology , Iowa State University , Ames , Iowa 50011 , United States.
Kevin C PotterRoy J. Carver Department of Biochemistry, Biophysics & Molecular Biology , Iowa State University , Ames , Iowa 50011 , United States.
Cody LemkeRoy J. Carver Department of Biochemistry, Biophysics & Molecular Biology , Iowa State University , Ames , Iowa 50011 , United States.
Reuben J PetersRoy J. Carver Department of Biochemistry, Biophysics & Molecular Biology , Iowa State University , Ames , Iowa 50011 , United States.ORCID 0000-0003-4691-8477
Iowa State University · US

Funding

Enzymatic formation of the hydrocarbon skeletons underlying diterpenoid diversityR01GM076324 · NIGMS · IOWA STATE UNIVERSITY · PI PETERS, REUBEN JOHN · 2006 to 2019
$3.4M
NIGMS NIH HHS R01 GM076324
6 · The paper itself

Abstract

Plants from the widespread Lamiaceae family produce many labdane-related diterpenoids, a number of which serve medicinal roles, and whose biosynthesis is initiated by class II diterpene cyclases (DTCs). These enzymes utilize a general acid-base catalyzed cyclo-isomerization reaction to produce various stereoisomers of the eponymous labdaenyl carbocation intermediate, which can then undergo rearrangement and/or the addition of water prior to terminating deprotonation. Identification of the pair of residues that cooperatively serve as the catalytic base in the DTCs that produce ent-copalyl diphosphate (CPP) required for gibberellin phytohormone biosynthesis in all vascular plants has led to insight into the addition of water as well as rearrangement. Lamiaceae plants generally contain an additional DTC that produces the enantiomeric normal CPP, as well as others that yield hydroxylated products derived from the addition of water. Here the catalytic base in these DTCs was investigated. Notably, changing two adjacent residues that seem to serve as the catalytic base in the normal CPP synthase from Salvia miltiorrhiza (SmCPS) to the residues found in the closely related perigrinol diphosphate synthase from Marrubium vulgare (MvPPS), which produces a partially rearranged and hydroxylated product derived from the distinct syn stereoisomer of labdaenyl

Indexed as

Biosynthetic PathwaysAlkyl and Aryl TransferasesDiterpenesLamiaceaeModels, MolecularPlant Growth RegulatorsPlant ProteinsSalvia miltiorrhizaStereoisomerismSubstrate SpecificityAlkyl and Aryl TransferasesDiterpenesent-kaurene synthetase APlant Growth RegulatorsPlant Proteins

Identifiers

PMID29787239
PMCPMC6019628
OpenAlexW2803903996

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.