Evidence map›Paper›PMID 29786687›Full record

ArticleScientific reports2018

Genome-wide analysis of circular RNAs in bovine cumulus cells treated with BMP15 and GDF9.

Yao Fu, Hao Jiang, Jian-Bo Liu, Xu-Lei Sun, Zhe Zhang, Sheng Li, Yan Gao, Bao Yuan, Jia-Bao Zhang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
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  6. CircTEC Inhibits the Follicular Atresia in Buffalo (International journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Yao FuDepartment of Laboratory Animal Science, College of Animal Sciences, Jilin University, Changchun, 130062, Jilin, P.R. China.
Hao JiangDepartment of Laboratory Animal Science, College of Animal Sciences, Jilin University, Changchun, 130062, Jilin, P.R. China.ORCID 0000-0003-2008-6166
Jian-Bo LiuDepartment of Laboratory Animal Science, College of Animal Sciences, Jilin University, Changchun, 130062, Jilin, P.R. China.
Xu-Lei SunDepartment of Laboratory Animal Science, College of Animal Sciences, Jilin University, Changchun, 130062, Jilin, P.R. China.
Zhe ZhangDepartment of Laboratory Animal Science, College of Animal Sciences, Jilin University, Changchun, 130062, Jilin, P.R. China.
Sheng LiDepartment of Laboratory Animal Science, College of Animal Sciences, Jilin University, Changchun, 130062, Jilin, P.R. China.
Yan GaoDepartment of Laboratory Animal Science, College of Animal Sciences, Jilin University, Changchun, 130062, Jilin, P.R. China.
Bao YuanDepartment of Laboratory Animal Science, College of Animal Sciences, Jilin University, Changchun, 130062, Jilin, P.R. China. yuan_bao@jlu.edu.cn.
Jia-Bao ZhangDepartment of Laboratory Animal Science, College of Animal Sciences, Jilin University, Changchun, 130062, Jilin, P.R. China. zjb515@126.com.
Jilin University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Circular RNAs (circRNAs) are important members of the non-coding RNA family, and those relating to animal physiologies have been widely studied in recent years. This study aimed to explore the roles of circRNAs in the regulation of follicular development. We constructed four bovine cumulus cell cDNA libraries, including a negative control group (NC) and groups treated with BMP15, GDF9 and BMP15 + GDF9, and we sequenced the libraries on the Illumina HiSeq Xten platform. We identified 1706 circRNAs and screened for differential circRNA expression. We conducted a bioinformatics analysis of these circRNAs and screened for differential circRNAs. Functional annotation and enrichment analysis of the host genes showed that the differential circRNAs were related to locomotion, reproduction, biological adhesion, growth, rhythmic processes, biological phases and hormone secretion. According to the differential expression of circRNA between groups, there were 3 up-regulated and 6 down-regulated circRNAs in the BMP15 group as well as 12 up-regulated and 24 down-regulated circRNAs in the GDF9 group. Co-addition of both BMP15 and GDF9 resulted in 15 up-regulated and 13 down-regulated circRNAs. circ_n/a_75,circ_12691_1 and circ_n/a_303 were altered in both the BMP15 and GDF9 groups as well as in the BMP15 + GDF9 combination group. We focused on these three circRNAs because they were potentially associated with the additive effect of BMP15 and GDF9. Quantitative PCR analysis showed that the expression levels of these three circRNAs were consistent with the sequencing results. In addition, the target miRNAs of circ_n/a_75 and circ_n/a_303, miR-339a, miR-2400 and miR-30c, were down-regulated in the experimental group, which was in contrast to the circRNAs trend. These findings demonstrated that BMP15 and GDF9 may regulate the target gene through circRNA, as a miRNA sponge, in order to regulate the status of bovine cumulus cells and affect follicular development.

Indexed as

GenomeAnimalsBiomarkersBone Morphogenetic Protein 15CattleComputational BiologyCumulus CellsFemaleGene Expression RegulationGene Regulatory NetworksGrowth Differentiation Factor 9MicroRNAsRNARNA, CircularRNA, MessengerBiomarkersBone Morphogenetic Protein 15Growth Differentiation Factor 9MicroRNAsRNARNA, CircularRNA, Messenger

Identifiers

PMID29786687
PMCPMC5962577
OpenAlexW2806645280

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.