Evidence map›Paper›PMID 29786079›Full record

ArticleNature structural & molecular biology2018

Dissection of DNA double-strand-break repair using novel single-molecule forceps.

Jing L Wang, Camille Duboc, Qian Wu, Takashi Ochi, Shikang Liang, Susan E Tsutakawa, Susan P Lees-Miller, Marc Nadal, John A Tainer, Tom L Blundell and 1 more

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 99 citations in OpenAlex.

  1. Core NHEJ Factors Maintain Synapsis Across Diverse DNA End Structures.bioRxiv : the preprint server for biology · 2026
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  7. Competition between glycine and GABAProceedings of the National Academy of Sciences of the United States of America · 2025
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  18. Key molecular DNA damage responses of human cells to radiation.Frontiers in cell and developmental biology · 2024
    Review
  19. Review
  20. Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 4 countries.

Jing L WangInstitut Jacques Monod, Université Paris Diderot, CNRS, UMR 7592, Paris, France.
Camille DubocInstitut Jacques Monod, Université Paris Diderot, CNRS, UMR 7592, Paris, France.
Qian WuDepartment of Biochemistry, Cambridge University, Cambridge, UK.
Takashi OchiDepartment of Biochemistry, Cambridge University, Cambridge, UK.
Shikang LiangDepartment of Biochemistry, Cambridge University, Cambridge, UK.
Susan E TsutakawaMolecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Susan P Lees-MillerDepartment of Biochemistry and Molecular Biology, Arnie Charbonneau Cancer Institute, University of Calgary, Calgary, Alberta, Canada.
Marc NadalInstitut Jacques Monod, Université Paris Diderot, CNRS, UMR 7592, Paris, France.
John A TainerMolecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0003-1659-2429
Tom L BlundellDepartment of Biochemistry, Cambridge University, Cambridge, UK.ORCID http://orcid.org/0000-0002-2708-8992
Terence R StrickInstitut Jacques Monod, Université Paris Diderot, CNRS, UMR 7592, Paris, France. strick@ens.fr.ORCID http://orcid.org/0000-0003-1744-3679
Centre National de la Recherche Scientifique · FRUniversity of Cambridge · GBLawrence Berkeley National Laboratory · USMRC Laboratory of Molecular Biology · GBThe University of Texas MD Anderson Cancer Center · USUniversity of Calgary · CA

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI John A. Tainer · 2001 to 2026
$89.6M
Integrative modeling of PCNA assemblies engaged in genome duplication and repairR01GM110387 · NIGMS · GEORGIA STATE UNIVERSITY · PI IVANOV, IVAYLO NIKOLAEV · 2015 to 2019
$1.7M
NCI NIH HHS P01 CA092584NIGMS NIH HHS R01 GM110387Wellcome Trust 093167Wellcome Trust 200814Wellcome Trust 200814/Z/16/Z
6 · The paper itself

Abstract

Repairing DNA double-strand breaks (DSBs) by nonhomologous end joining (NHEJ) requires multiple proteins to recognize and bind DNA ends, process them for compatibility, and ligate them together. We constructed novel DNA substrates for single-molecule nanomanipulation, allowing us to mechanically detect, probe, and rupture in real-time DSB synapsis by specific human NHEJ components. DNA-PKcs and Ku allow DNA end synapsis on the 100 ms timescale, and the addition of PAXX extends this lifetime to ~2 s. Further addition of XRCC4, XLF and ligase IV results in minute-scale synapsis and leads to robust repair of both strands of the nanomanipulated DNA. The energetic contribution of the different components to synaptic stability is typically on the scale of a few kilocalories per mole. Our results define assembly rules for NHEJ machinery and unveil the importance of weak interactions, rapidly ruptured even at sub-picoNewton forces, in regulating this multicomponent chemomechanical system for genome integrity.

Indexed as

DNA Breaks, Double-StrandedDNA End-Joining RepairAnimalsCalcium-Binding ProteinsChromosome PairingDNADNA-Binding ProteinsDNA Ligase ATPDNA Repair EnzymesDNA Restriction EnzymesGenetic TechniquesHumansKu AutoantigenPhosphorylationSf9 CellsSpodopteraCalcium-Binding ProteinsCIB1 protein, humanDNADNA-Binding ProteinsDNA Ligase ATPDNA Repair EnzymesDNA Restriction EnzymesKu AutoantigenNHEJ1 protein, humanPAXX protein, humanXRCC4 protein, humanXRCC5 protein, human

Identifiers

PMID29786079
PMCPMC5990469
OpenAlexW2804261193

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.